Tableau information
Concept source: d1mnja_ amino acid (a.a.) range (GLU52)(LYS98)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU52) (SER58) H1
(SER58) (LYS79) H2
(HIS82) (LYS98) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -70.3° H2
H3 127.9° -144.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3hm8a2 : (GLN745) (ARG785) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s7oa_ : (SER51) (ARG112) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d1vs6x1 : (THR16) (SER40) [view usage] : a.2.2.1 |Long alpha-hairpin |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Escherichia coli [TaxId: 562]
d1wu3i_ : (GLN102) (ASN161) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interferon-beta |Mouse (Mus musculus) [TaxId: 10090]
d2a1kb_ : (ASP83) (LEU109) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |automated matches |Enterobacteria phage [TaxId: 12353]
d2pg6b_ : (PRO233) (THR284) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sk7a_ : (SER15) (ASN65) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Pseudomonas aeruginosa [TaxId: 287]
d3suna2 : (SER534) (ALA593) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2joha_ : (ASN142) (GLY194) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1s7oc_ : (ARG52) (ARG112) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d1p3ta_ : (PHE11) (ASP62) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Neisseria meningitidis [TaxId: 487]
d3ph2b_ : (ASP3) (THR31) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Phormidium laminosum [TaxId: 32059]
d1ntya1 : (SER1344) (SER1412) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Triple functional domain protein TRIO |Human (Homo sapiens) [TaxId: 9606]
d1z77a2 : (ASP77) (LEU121) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator TM1030 |Thermotoga maritima [TaxId: 2336]
d2j80b_ : (ARG7) (LEU44) [view usage] : d.110.6.1 |Profilin-like |Sensory domain-like |Sensory domain of two-component sensor kinase |automated matches |Klebsiella pneumoniae [TaxId: 573]
d2arcb_ : (ASP123) (GLU169) [view usage] : b.82.4.1 |Double-stranded beta-helix |Regulatory protein AraC |Regulatory protein AraC |Regulatory protein AraC |Escherichia coli [TaxId: 562]
d1svla_ : (GLN310) (LEU355) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d2f1kc1 : (THR166) (LEU207) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1xjac_ : (ASP123) (ALA166) [view usage] : b.82.4.1 |Double-stranded beta-helix |Regulatory protein AraC |Regulatory protein AraC |Regulatory protein AraC |Escherichia coli [TaxId: 562]
d1occa_ : (MET1) (ALA62) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Mitochondrial cytochrome c oxidase, subunit I |Cow (Bos taurus) [TaxId: 9913]
d2j80a_ : (GLU6) (LEU44) [view usage] : d.110.6.1 |Profilin-like |Sensory domain-like |Sensory domain of two-component sensor kinase |automated matches |Klebsiella pneumoniae [TaxId: 573]
d2f1ka1 : (THR166) (LEU207) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1s7ob_ : (ARG52) (ASP110) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d2doub_ : (ALA42) (LEU66) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3rmca2 : (ASN787) (ALA821) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1jpzb_ : (ASN163) (ALA225) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d2g5cb1 : (PRO256) (ILE310) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d2pfma_ : (PRO8) (GLU50) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4hz2b2 : (LEU85) (GLU122) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d1jcga2 : (GLY243) (GLY280) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d2haea2 : (TYR32) (VAL52) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1xoaa_ : (ALA29) (THR54) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Escherichia coli [TaxId: 562]
d3vlka1 : (LEU369) (HIS408) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
d4ovja_ : (ASN343) (VAL388) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Alicyclobacillus acidocaldarius [TaxId: 521098]
d1kz7a1 : (LEU761) (ILE818) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Dbl's big sister, Dbs |Mouse (Mus musculus) [TaxId: 10090]
d1g5ba_ : (ASN91) (ASP120) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |lambda ser/thr protein phosphatase |Bacteriophage lambda [TaxId: 10710]
d1qb3b_ : (LYS248) (GLY276) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |cks1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ir6a_ : (ALA261) (LEU289) [view usage] : c.107.1.2 |DHH phosphoesterases |DHH phosphoesterases |Exonuclease RecJ |Exonuclease RecJ |Thermus thermophilus [TaxId: 274]
d2g5cc1 : (PRO256) (ILE305) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d3bk9g_ : (ASN212) (ALA268) [view usage] : a.266.1.0 |Indolic compounds 2,3-dioxygenase-like |Indolic compounds 2,3-dioxygenase-like |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1q2la4 : (GLU160) (LYS197) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Protease III |Escherichia coli [TaxId: 562]
d2hkua2 : (THR89) (VAL142) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator RHA1_ro03468 |Rhodococcus sp. RHA1 [TaxId: 101510]
d3dina2 : (LEU619) (SER689) [view usage] : a.172.1.1 |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Thermotoga maritima MSB8 [TaxId: 243274]
d2a9ua1 : (SER16) (ARG76) [view usage] : a.118.23.1 |alpha-alpha superhelix |USP8 N-terminal domain-like |USP8 N-terminal domain-like |Ubiquitin carboxyl-terminal hydrolase 8, USH8 |Human (Homo sapiens) [TaxId: 9606]
d1sva6_ : (THR183) (TRP208) [view usage] : b.121.6.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group I dsDNA viruses |Papovaviridae-like VP |Polyomavirus coat proteins |Simian virus 40, Sv40 [TaxId: 10633]
d1nr3a_ : (ALA12) (LYS44) [view usage] : d.236.1.1 |DNA-binding protein Tfx |DNA-binding protein Tfx |DNA-binding protein Tfx |DNA-binding protein Tfx |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4lrlc_ : (VAL240) (LYS295) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein EF1143 |Enterococcus faecalis [TaxId: 1351]
d1a0ca_ : (ARG385) (ARG414) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
d3h1hn1 : (GLU123) (THR166) [view usage] : d.185.1.0 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2ccda1 : (LEU378) (HIS417) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3gfoa_ : (ASN225) (ILE252) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
d2dfka1 : (SER162) (GLU239) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2a9ub_ : (SER16) (ARG76) [view usage] : a.118.23.1 |alpha-alpha superhelix |USP8 N-terminal domain-like |USP8 N-terminal domain-like |Ubiquitin carboxyl-terminal hydrolase 8, USH8 |Human (Homo sapiens) [TaxId: 9606]
d3qy2b_ : (PRO47) (GLY76) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1n25a_ : (GLN310) (LEU353) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d1mbsa_ : (SER51) (THR95) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Common seal (Phoca vitulina) [TaxId: 9720]
d2dpwa1 : (ASP152) (VAL180) [view usage] : c.68.1.19 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |TTHA0179-like |Uncharacterized protein TTHA0179 |Thermus thermophilus [TaxId: 274]
d1j77a_ : (THR10) (ASP62) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Neisseria meningitidis [TaxId: 487]
d4f13a_ : (ASN77) (ASP124) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d1rtwb_ : (PHE2) (ALA59) [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Putative transcriptional activator PF1337 |Pyrococcus furiosus [TaxId: 2261]
d1qb3a_ : (LYS48) (GLY76) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |cks1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4ia4d_ : (PRO201) (LEU264) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
d1jcea2 : (GLY243) (GLY280) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Prokaryotic actin homolog MreB |Thermotoga maritima [TaxId: 2336]
d3br3a2 : (ASN75) (LEU119) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Multidrug binding protein QacR |Staphylococcus aureus [TaxId: 1280]
d3wnua1 : (THR372) (HIS411) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Synechococcus elongatus [TaxId: 1140]
d2bfwa1 : (ASP259) (MET284) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Pyrococcus abyssi [TaxId: 29292]
d3e08f_ : (ASN212) (LEU269) [view usage] : a.266.1.0 |Indolic compounds 2,3-dioxygenase-like |Indolic compounds 2,3-dioxygenase-like |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1itkb1 : (LEU369) (HIS408) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Haloarcula marismortui [TaxId: 2238]
d3rpna_ : (ILE44) (LEU77) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, c.67, c.94, a.104, d.159, a.118, c.68, a.102, a.93, a.127, a.211, b.40, c.37, c.47, d.185, c.55, c.107, b.121,
c.87, a.132, d.110, a.266, f.24, a.1, a.100, a.4, a.45, a.3, c.58, f.19, a.87, a.26, d.6, a.2, a.121, d.97, a.172, d.236