Tableau information
Concept source: d1wyla_ amino acid (a.a.) range (PRO55)(VAL90)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO55) (LEU61) H1
(GLY62) (GLY79) H2
(SER85) (VAL90) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -150.7° H2
H3 -52.1° 127.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pgwa1 : (TYR91) (GLY130) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1isna1 : (GLN111) (LYS159) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Merlin |Mouse (Mus musculus) [TaxId: 10090]
d2o9da_ : (ASN63) (GLY115) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin Z |Escherichia coli [TaxId: 562]
d2e22a1 : (TYR293) (ARG313) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |automated matches |Bacillus sp. [TaxId: 84635]
d1es3a_ : (THR84) (LEU132) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d3zkpa_ : (VAL316) (ARG373) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 405948]
d175lb_ : (SER136) (LEU164) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d3pfdc1 : (PHE60) (LEU95) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d2btwb1 : (SER38) (GLY83) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d2nsfa1 : (LEU9) (LEU92) [view usage] : a.213.1.4 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Maleylpyruvate isomerase-like |Micothiol-dependent maleylpyruvate isomerase |Corynebacterium glutamicum [TaxId: 1718]
d1crxa2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1z1ga2 : (THR181) (MSE219) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase (Int) |Bacteriophage lambda [TaxId: 10710]
d3i4bb_ : (PRO311) (ALA382) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d2ij5c_ : (ASP315) (LYS365) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d2i9wa1 : (ALA52) (LEU83) [view usage] : d.17.4.30 |Cystatin-like |NTF2-like |SEC-C associated NTF2-like domain |Hypothetical protein Psyc2064 |Psychrobacter arcticus [TaxId: 334543]
d2axtc1 : (PRO80) (ILE134) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II CP43 protein PsbC |Thermosynechococcus elongatus [TaxId: 146786]
d1j4na_ : (ASN194) (SER249) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin-1 |Cow (Bos taurus) [TaxId: 9913]
d1mhyd_ : (PRO25) (VAL95) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylosinus trichosporium [TaxId: 426]
d1ytma2 : (ASP484) (LYS516) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d1qgia_ : (GLU199) (ASP255) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d3n20a_ : (GLY238) (LEU295) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d1ciia2 : (ASP125) (SER292) [view usage] : h.4.3.1 |Antiparallel coiled-coil |Colicin Ia, N-terminal domain |Colicin Ia, N-terminal domain |Colicin Ia, N-terminal domain |Escherichia coli [TaxId: 562]
d1aiha_ : (GLU176) (THR213) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase |Bacteriophage HP1 [TaxId: 10690]
d3m9ia_ : (ASN68) (GLY114) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d4pxha_ : (ASP328) (THR376) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d2ajea1 : (ALA43) (GLN97) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Telomere repeat-binding protein |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1sofb_ : (GLY97) (MET154) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |automated matches |Azotobacter vinelandii [TaxId: 354]
d1cxya_ : (GLY47) (LEU82) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |Cytochrome b558 |Ectothiorhodospira vacuolata [TaxId: 1054]
d2hoia2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |automated matches |Enterobacteria phage [TaxId: 10678]
d1uzra_ : (LEU173) (LEU245) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Mycobacterium tuberculosis [TaxId: 1773]
d2fb5a1 : (GLU7) (ARG90) [view usage] : d.320.1.1 |YojJ-like |YojJ-like |YojJ-like |Hypothetical protein BC4920 (YojJ) |Bacillus cereus [TaxId: 1396]
d3cy1a_ : (ASP315) (LYS365) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d1qrta2 : (ASP287) (ARG312) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d3d9sc_ : (ASN185) (GLY241) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2onga2 : (GLU525) (PHE595) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha spicata [TaxId: 29719]
d1ehib1 : (ASP452) (ILE485) [view usage] : c.30.1.2 |PreATP-grasp domain |PreATP-grasp domain |D-Alanine ligase N-terminal domain |D-alanine:D-lactate ligase VanA, N-domain |Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
d1wixa_ : (LYS60) (ALA108) [view usage] : a.40.3.1 |CH domain-like |Hook domain |Hook domain |Hook homolog 1, Hook1 |Mouse (Mus musculus) [TaxId: 10090]
d2g6ta1 : (TYR71) (PRO111) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d5ptda_ : (SER3) (ILE26) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
d2pywa_ : (VAL373) (GLN419) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1pyya4 : (THR387) (LYS420) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2x (pbp-2x), transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2d05a_ : (GLU199) (ASP255) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d3fefa2 : (LYS387) (LEU440) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |automated matches |Bacillus subtilis [TaxId: 1423]
d1zzma1 : (ASN214) (LEU255) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Putative deoxyribonuclease YjjV |Escherichia coli [TaxId: 562]
d3scxa2 : (SER523) (ALA593) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3pfda1 : (PHE60) (LEU95) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d2nsga1 : (LEU9) (LEU92) [view usage] : a.213.1.4 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Maleylpyruvate isomerase-like |Micothiol-dependent maleylpyruvate isomerase |Corynebacterium glutamicum [TaxId: 1718]
d5crxb2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d2p12b_ : (ASP119) (GLY166) [view usage] : b.175.1.1 |FomD barrel-like |FomD-like |FomD-like |Hypothetical protein RHA1_ro00977 |Rhodococcus sp. RHA1 [TaxId: 101510]
d3cy0a_ : (ASP315) (LYS365) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d3rnga_ : (ARG233) (ILE298) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d2vbna_ : (LEU112) (ASP153) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2q73d_ : (ALA16) (LYS91) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Vibrio sp. [TaxId: 344879]
d4a19e_ : (GLU113) (SER176) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3omnc_ : (ILE202) (GLY269) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d1crxa1 : (SER20) (ARG81) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d2yb0d_ : (LEU218) (ASN262) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d2hyec3 : (SER468) (HIS562) [view usage] : e.40.1.1 |Cullin homology domain |Cullin homology domain |Cullin homology domain |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d2rdba_ : (SER232) (LEU295) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas stutzeri [TaxId: 316]
d2q9ld_ : (PRO17) (VAL90) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Vibrio sp. [TaxId: 344879]
d1xo0a2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1aihb_ : (TYR175) (LEU214) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase |Bacteriophage HP1 [TaxId: 10690]
d1pvpa2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1ztdb_ : (LYS5) (LYS61) [view usage] : a.149.1.2 |RNase III domain-like |RNase III domain-like |PF0609-like |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2qsgx_ : (THR258) (ALA296) [view usage] : a.189.1.0 |XPC-binding domain |XPC-binding domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3om8b_ : (ALA132) (ARG166) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3j39e_ : (ASN164) (MET229) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2g6tb_ : (TYR71) (PRO111) [view usage] : c.147.1.1 |CAC2185-like |CAC2185-like |CAC2185-like |Hypothetical protein CAC2185 |Clostridium acetobutylicum [TaxId: 1488]
d1nzba1 : (GLU22) (ARG81) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1pvqa2 : (GLU138) (ILE180) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d2yvxa1 : (LEU9) (LEU36) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d3j39c_ : (SER158) (LYS185) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3n1ya_ : (SER232) (LEU295) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d2cxfa1 : (ASN85) (VAL158) [view usage] : a.256.1.1 |RUN domain-like |RUN domain-like |RUN domain |Rap2 interacting protein X (RUFY3) |Mouse (Mus musculus) [TaxId: 10090]
d2ij5d_ : (ASP315) (LYS365) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d1mzoa_ : (ILE189) (SER268) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1cm5a_ : (ILE189) (SER268) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1h1lb_ : (ARG472) (ASP512) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Klebsiella pneumoniae [TaxId: 573]
d3a7na_ : (GLY-3) (LEU18) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1es5a_ : (THR84) (GLY133) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d2fb5b_ : (ASN3) (ARG90) [view usage] : d.320.1.1 |YojJ-like |YojJ-like |YojJ-like |Hypothetical protein BC4920 (YojJ) |Bacillus cereus [TaxId: 1396]
d1gmya_ : (PRO15) (CYS63) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Human (Homo sapiens) [TaxId: 9606]
d1t77a1 : (MET2211) (TYR2243) [view usage] : a.169.1.1 |BEACH domain |BEACH domain |BEACH domain |Lipopolysaccharide-responsive and beige-like anchor protein LRBA |Human (Homo sapiens) [TaxId: 9606]
d4ohca_ : (THR184) (ALA219) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d2yazb_ : (SER217) (ARG263) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d1dawa_ : (PRO200) (TYR234) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d3rysb_ : (ILE47) (GLY94) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, c.69, a.104, i.1, a.118, c.26, a.128, c.92, a.102, d.144, c.7, c.18, e.6, d.2, d.3, a.25, d.17, f.24,
c.61, a.4, d.162, c.91, c.30, f.19, d.95, d.54, a.40, h.4, d.120, a.149, a.11, a.60, e.40, a.204, c.147, b.175, a.189, a.213,
f.55, d.163, a.169, d.320, a.256