Tableau information
Concept source: d1u3ia2 amino acid (a.a.) range (LEU135)(SER195)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU135) (SER146) H1
(LEU158) (ASP174) H2
(PRO183) (SER195) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -147.9° H2
H3 50.0° -127.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4bh2b_ : (LEU126) (ARG167) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza virus [TaxId: 284218]
d3zqza_ : (GLU21) (LYS102) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1hysb_ : (VAL254) (GLU312) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2dy1a2 : (ARG198) (GLY245) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor G (EF-G), N-terminal (G) domain |Thermus thermophilus, EF-G-2 [TaxId: 274]
d1ft2b_ : (GLY249) (GLY319) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jqha_ : (ASN10) (ASN81) [view usage] : a.7.14.1 |Spectrin repeat-like |MIT domain |MIT domain |Vacuolar sorting protein 4b (VPS4B, SKD1 protein) |Human (Homo sapiens) [TaxId: 9606]
d4btna_ : (ASP117) (LYS171) [view usage] : a.135.1.1 |Tetraspanin |Tetraspanin |Tetraspanin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ykna1 : (VAL254) (LYS311) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d2x8ya_ : (GLU21) (LYS102) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3tk8b_ : (GLN40) (GLU108) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1g7oa1 : (SER140) (THR205) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Glutaredoxin 2 |Escherichia coli [TaxId: 562]
d1q15a2 : (ASN61) (GLY93) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |beta-Lactam synthetase |Pectobacterium carotovorum [TaxId: 554]
d1m2vb1 : (PHE710) (TYR753) [view usage] : a.71.2.1 |ERP29 C domain-like |Helical domain of Sec23/24 |Helical domain of Sec23/24 |Sec24 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tz7b_ : (SER129) (LEU171) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d2aqxa_ : (ARG762) (ILE799) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3vwxa2 : (GLN129) (LEU195) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |House fly (Musca domestica) [TaxId: 7370]
d3n3ka_ : (LYS848) (ASN885) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d3j39q_ : (ASP22) (PRO59) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2cwqa1 : (ARG7) (PRO47) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d1vbfb_ : (ALA1) (TYR38) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Sulfolobus tokodaii [TaxId: 111955]
d2g77a1 : (SER250) (GLY295) [view usage] : a.69.2.1 |Left-handed superhelix |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4lh7a_ : (THR7) (GLY70) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d3gosb_ : (SER0) (ASN70) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Yersinia pestis [TaxId: 632]
d1ug9a1 : (ALA460) (SER554) [view usage] : a.102.1.5 |alpha/alpha toroid |Six-hairpin glycosidases |Bacterial glucoamylase C-terminal domain-like |Glucodextranase, domain A |Arthrobacter globiformis [TaxId: 1665]
d2ehhc_ : (SER204) (LEU236) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d4hz2b2 : (GLU122) (LEU191) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d1hp8a_ : (CYS7) (LYS64) [view usage] : a.17.1.1 |Cysteine alpha-hairpin motif |Cysteine alpha-hairpin motif |p8-MTCP1 |p8-MTCP1 |Human (Homo sapiens) [TaxId: 9606]
d1mmpa_ : (LEU213) (TYR262) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Matrilysin (MMP-7) |Human (Homo sapiens) [TaxId: 9606]
d3zjkb_ : (ALA22) (TYR59) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermus thermophilus [TaxId: 274]
d4bcea_ : (ALA22) (TYR59) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3jsla_ : (LEU4) (GLY63) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Staphylococcus aureus [TaxId: 1280]
d1ua4a_ : (ASN292) (THR334) [view usage] : c.72.1.3 |Ribokinase-like |Ribokinase-like |ADP-specific Phosphofructokinase/Glucokinase |ADP-dependent glucokinase |Pyrococcus furiosus [TaxId: 2261]
d3k6cd_ : (SER14) (TYR85) [view usage] : a.25.1.5 |Ferritin-like |Ferritin-like |half-ferritin |Hypothetical protein NE0167 |Nitrosomonas europaea [TaxId: 915]
d1zaua_ : (THR9) (VAL71) [view usage] : d.142.2.0 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2noxa_ : (SER184) (ASN229) [view usage] : a.266.1.0 |Indolic compounds 2,3-dioxygenase-like |Indolic compounds 2,3-dioxygenase-like |automated matches |automated matches |Cupriavidus metallidurans [TaxId: 119219]
d2rd2a2 : (SER269) (GLY300) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli K-12 [TaxId: 83333]
d1rrza_ : (ASP2) (ARG60) [view usage] : a.7.10.1 |Spectrin repeat-like |Glycogen synthesis protein GlgS |Glycogen synthesis protein GlgS |Glycogen synthesis protein GlgS |Escherichia coli [TaxId: 562]
d1ta8a_ : (LEU8) (GLY70) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1qsja_ : (GLY1038) (LYS1111) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ivya_ : (SER182) (ILE238) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Human 'protective protein', HPP |Human (Homo sapiens) [TaxId: 9606]
d2cwqc_ : (ARG7) (MSE46) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d4al1a_ : (PRO63) (LEU152) [view usage] : f.56.1.0 |MAPEG domain-like |MAPEG domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w2fa_ : (LYS286) (ILE322) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A |Human (Homo sapiens) [TaxId: 9606]
d2x8za_ : (LEU18) (LYS102) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1nlwd_ : (SER502) (LEU578) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Mad protein |Human (Homo sapiens) [TaxId: 9606]
d1wpba_ : (ASN11) (GLU56) [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |Hypothetical protein YfbU |Escherichia coli [TaxId: 562]
d1nlwb_ : (LYS203) (VAL278) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Max protein |Human (Homo sapiens) [TaxId: 9606]
d1j5sb_ : (HIS56) (VAL88) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
d3baaa_ : (LEU8) (GLY70) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1qsaa1 : (ASP319) (GLY361) [view usage] : a.118.5.1 |alpha-alpha superhelix |Bacterial muramidases |Bacterial muramidases |70 KDa soluble lytic transglycosylase (SLT70), superhelical domain |Escherichia coli [TaxId: 562]
d1qsaa1 : (SER412) (PRO450) [view usage] : a.118.5.1 |alpha-alpha superhelix |Bacterial muramidases |Bacterial muramidases |70 KDa soluble lytic transglycosylase (SLT70), superhelical domain |Escherichia coli [TaxId: 562]
d1qe1b_ : (VAL254) (LYS311) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2lgwa_ : (SER15) (GLU71) [view usage] : a.2.3.0 |Long alpha-hairpin |Chaperone J-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sv5b_ : (VAL254) (GLU312) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1hn0a1 : (LEU336) (MET404) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Chondroitin ABC lyase I |Proteus vulgaris [TaxId: 585]
d1hfsa_ : (PHE196) (TYR246) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
d2v7ga_ : (ASP269) (GLN316) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |automated matches |Pseudomonas putida [TaxId: 303]
d1taea_ : (THR7) (ARG68) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d3zjkc_ : (ALA22) (TYR59) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermus thermophilus [TaxId: 274]
d1s9gb_ : (THR253) (PRO313) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1w2ca_ : (LYS286) (ILE322) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A |Human (Homo sapiens) [TaxId: 9606]
d1vjxa_ : (LYS2) (SER64) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Hypothetical protein TM1526 |Thermotoga maritima [TaxId: 2336]
d2xolb_ : (HIS90) (GLU169) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3qt3a_ : (TRP357) (LYS426) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d4al0a_ : (PRO63) (LEU152) [view usage] : f.56.1.0 |MAPEG domain-like |MAPEG domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zboa1 : (ASP158) (ALA197) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |Hypothetical protein BPP1347 |Bordetella parapertussis [TaxId: 519]
d4lr3a_ : (THR10) (ASP54) [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |automated matches |Escherichia coli [TaxId: 562]
d2cwqb_ : (GLU6) (MSE46) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein TTHA0727 |Thermus thermophilus [TaxId: 274]
d3s11d_ : (LEU126) (GLU172) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
d3dssb_ : (LYS68) (GLN127) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1mmra_ : (LEU213) (TYR262) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Matrilysin (MMP-7) |Human (Homo sapiens) [TaxId: 9606]
d1kjya1 : (SER62) (ASP133) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ks9a1 : (SER243) (GLU291) [view usage] : a.100.1.7 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Ketopantoate reductase PanE |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d3scka_ : (THR20) (GLN101) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d1r42a_ : (GLU22) (LEU100) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Human (Homo sapiens) [TaxId: 9606]
d2ehoi1 : (THR22) (PHE103) [view usage] : a.278.1.4 |GINS helical bundle-like |GINS helical bundle-like |SLD5 N-terminal domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2be2b_ : (THR253) (PRO313) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d4cqvb_ : (LEU126) (SER163) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/turkey/turkey/1/2005(h5n1)) [TaxId: 375457]
d1tz7a1 : (SER129) (LEU171) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylomaltase MalQ |Aquifex aeolicus [TaxId: 63363]
d1fkma1 : (SER250) (ARG286) [view usage] : a.69.2.1 |Left-handed superhelix |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Ypt/Rab-GAP domain of gyp1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2j4ga1 : (THR496) (ASN581) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Glucosaminidase GH84 post-catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d1wpbm_ : (THR10) (ARG55) [view usage] : a.233.1.1 |YfbU-like |YfbU-like |YfbU-like |Hypothetical protein YfbU |Escherichia coli [TaxId: 562]
d1ahua2 : (THR147) (HIS197) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |Vanillyl-alcohol oxidase |Fungus (Penicillium simplicissimum) [TaxId: 69488]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, b.81, i.1, a.118, c.26, a.102, c.66, d.92, c.72, c.37, d.153, d.3, b.122, d.143, a.266, a.25, d.142, a.152,
a.100, d.145, e.51, h.3, a.45, a.66, a.278, a.71, a.7, a.184, a.38, a.69, a.2, f.56, a.246, a.135, a.233, a.17