Tableau information
Concept source: d1cwya_ amino acid (a.a.) range (TYR97)(TRP137)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR97) (TRP103) H1
(LYS104) (ALA119) H2
(SER120) (TRP137) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 29.6° H2
H3 -119.7° -122.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4pj0c_ : (SER267) (PHE358) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d2goxa_ : (ALA997) (THR1019) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Human (Homo sapiens) [TaxId: 9606]
d4f5da_ : (VAL155) (SER195) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d1yq9h1 : (GLU237) (ILE274) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1shza1 : (ASP77) (ALA124) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1h3ea1 : (ASP310) (GLY348) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Thermus thermophilus [TaxId: 274]
d4n0wd_ : (ASP3) (GLU28) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d4nosa_ : (THR182) (GLN205) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d3lefa_ : (SER3) (SER38) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |automated matches |Artificial gene [TaxId: 32630]
d1xlse_ : (GLN119) (HIS154) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR1I3 (CAR) |Mouse (Mus musculus) [TaxId: 10090]
d1gzsd_ : (ASN170) (ILE189) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |GEF domain of SopE toxin |Salmonella typhimurium [TaxId: 90371]
d1eboa_ : (GLN3) (ARG108) [view usage] : h.3.2.1 |Stalk segment of viral fusion proteins |Virus ectodomain |Virus ectodomain |Core structure of Ebo gp2 |Ebola virus [TaxId: 205488]
d1mmod_ : (ASP196) (THR241) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1r6ea_ : (THR82) (GLN109) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |Effector protein SopE2 |Salmonella typhimurium [TaxId: 90371]
d1dd5a_ : (PHE5) (GLU39) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Thermotoga maritima [TaxId: 2336]
d1dtza2 : (PRO663) (LEU687) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Camel (Camelus dromedarius) [TaxId: 9838]
d1fz7f_ : (ASN73) (GLN116) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d1xv9b_ : (SER107) (HIS144) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR1I3 (CAR) |Human (Homo sapiens) [TaxId: 9606]
d1aora1 : (LEU572) (TYR605) [view usage] : a.110.1.1 |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d1hfbf_ : (ASP80) (SER103) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1mu0a_ : (VAL134) (GLY163) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d1i29a_ : (ASP6) (ASN81) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d4n72b_ : (GLY517) (GLN543) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d1dp6a_ : (GLU194) (ILE218) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d2gtrb_ : (ARG219) (GLN255) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s8ra_ : (GLU74) (ASN118) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d2moua_ : (SER180) (PHE214) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j7db_ : (ILE101) (LEU146) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
d2pkyx_ : (ASP124) (LYS142) [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
d1aoka_ : (LEU2) (TRP31) [view usage] : a.133.1.2 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Vertebrate phospholipase A2 |Snake phospholipase A2 |Sand viper (Vipera ammodytes meridionalis), vipoxin inhibitor [TaxId: 8704]
d3odoa1 : (ALA503) (ARG546) [view usage] : a.87.1.0 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lt0a_ : (GLU194) (ILE218) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1rjfb_ : (ARG57) (THR82) [view usage] : c.66.1.37 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Leucine carboxy methyltransferase Ppm1 |Leucine carboxy methyltransferase Ppm1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1x86e1 : (ASP905) (LEU994) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 12 |Human (Homo sapiens), gamma isoform [TaxId: 9606]
d1exzb_ : (SER241) (ASN293) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Stem cell factor, SCF |Human (Homo sapiens) [TaxId: 9606]
d3p71t_ : (ASP23) (PHE54) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3owod_ : (GLY278) (MET307) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
d1z69a_ : (PRO218) (GLY245) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Methanosarcina barkeri [TaxId: 2208]
d2hrba_ : (ILE241) (GLN265) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3axja_ : (PRO0) (VAL80) [view usage] : a.118.16.0 |alpha-alpha superhelix |Translin |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1be0a_ : (ASP124) (LYS142) [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
d1yovc_ : (PHE189) (HIS211) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3cwva2 : (LEU327) (ARG355) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
d1x2la1 : (THR66) (ARG95) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |Homeobox protein Cux-2, CUTL2 |Human (Homo sapiens) [TaxId: 9606]
d3pgxa_ : (THR209) (SER230) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 1770]
d3p1td_ : (PRO31) (SER64) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3p1tb_ : (PRO31) (SER64) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1fg4b_ : (THR124) (PHE140) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d1xk1a1 : (THR43) (TYR78) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase-1 (HO-1) |Human (Homo sapiens) [TaxId: 9606]
d4ip3b_ : (GLN100) (MET149) [view usage] : d.20.1.0 |UBC-like |UBC-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jrha_ : (GLN56) (SER74) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Mitogen-activated protein kinase kinase kinase 3, MEKK 3 |Human (Homo sapiens) [TaxId: 9606]
d2frvb_ : (ARG235) (ILE274) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1esca_ : (GLY104) (LYS123) [view usage] : c.23.10.1 |Flavodoxin-like |SGNH hydrolase |Esterase |Esterase |Streptomyces scabies [TaxId: 1930]
d1an9a2 : (ASN252) (ASP272) [view usage] : d.16.1.3 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |D-aminoacid oxidase-like |D-aminoacid oxidase |Pig (Sus scrofa) [TaxId: 9823]
d4jc5a_ : (ASN153) (ALA192) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ep7a_ : (CYS36) (ILE58) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1lnsa1 : (ASN12) (SER65) [view usage] : a.40.2.1 |CH domain-like |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |Lactococcus lactis [TaxId: 1358]
d3i6ea2 : (GLY306) (GLY325) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 89184]
d1ozya_ : (ASN1) (LYS31) [view usage] : a.133.1.2 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Vertebrate phospholipase A2 |Snake phospholipase A2 |Small-eye snake (Micropechis ikaheka), different isoforms [TaxId: 66188]
d4mdha2 : (ASP214) (TRP257) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d3lieb2 : (ILE239) (SER260) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d3qjqa_ : (PRO16) (LEU58) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1zcba1 : (ASP77) (ALA124) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, c.2, a.118, c.26, a.102, c.66, c.14, e.18, e.22, d.129, c.23, c.47, d.153, d.14, d.174, a.132, a.123,
d.20, d.110, c.43, a.25, f.24, c.111, d.67, d.162, h.3, d.15, d.16, a.23, a.87, a.66, a.40, a.133, a.26, a.35, a.110, d.387,
f.55, a.168