Tableau information
Concept source: d3rita1 amino acid (a.a.) range (THR58)(PRO94)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR58) (ASP67) H1
(ASP67) (MET75) H2
(LEU82) (PRO94) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -44.9° H2
H3 127.5° 149.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3tuid1 : (THR98) (GLY129) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1aqia2 : (ASP367) (LEU403) [view usage] : d.287.1.1 |DNA methylase specificity domain |DNA methylase specificity domain |TaqI C-terminal domain-like |DNA methylase TaqI, C-terminal domain |Thermus aquaticus [TaxId: 271]
d1aqja2 : (ASP367) (LEU403) [view usage] : d.287.1.1 |DNA methylase specificity domain |DNA methylase specificity domain |TaqI C-terminal domain-like |DNA methylase TaqI, C-terminal domain |Thermus aquaticus [TaxId: 271]
d1gt8a1 : (LEU135) (MET166) [view usage] : a.1.2.2 |Globin-like |alpha-helical ferredoxin |Dihydropyrimidine dehydrogenase, N-terminal domain |Dihydropyrimidine dehydrogenase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3hoaa_ : (GLN461) (GLY489) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d1iu3c_ : (SER5) (ASP37) [view usage] : d.228.1.1 |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d3puvf2 : (THR427) (ALA502) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalF |Escherichia coli [TaxId: 562]
d2q2qd_ : (THR187) (LYS215) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas putida [TaxId: 303]
d2ih5a2 : (ASP367) (LEU403) [view usage] : d.287.1.1 |DNA methylase specificity domain |DNA methylase specificity domain |TaqI C-terminal domain-like |DNA methylase TaqI, C-terminal domain |Thermus aquaticus [TaxId: 271]
d2j62a2 : (HIS433) (TYR468) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d4egmb_ : (ALA200) (ALA248) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1oahb_ : (MET346) (TYR396) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Cytochrome c nitrite reductase |Desulfovibrio desulfuricans [TaxId: 876]
d4v06a_ : (ASP176) (TYR201) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mr8a_ : (ALA51) (SER86) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]
d2z15b_ : (GLY6) (GLU50) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |TOB1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2z15a1 : (MET10) (GLU50) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |TOB1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1j57a_ : (ASP70) (ASN106) [view usage] : d.221.1.1 |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |Nuclease A inhibitor (NuiA) |Nostoc sp. PCC 7120 [TaxId: 103690]
d2ghba_ : (VAL336) (GLN376) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1t5ja_ : (CYS122) (SER150) [view usage] : a.209.1.1 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |Hypothetical protein MJ1187 |Methanococcus jannaschii [TaxId: 2190]
d2ij5a_ : (ARG95) (GLY151) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d1kcxa2 : (GLU377) (ARG400) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |Dihydropyrimidinase related protein-1 |Mouse (Mus musculus) [TaxId: 10090]
d1mx9d_ : (ILE4396) (MET4425) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d1ec8a2 : (GLY58) (ALA92) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |D-glucarate dehydratase |Escherichia coli [TaxId: 562]
d2bo4a1 : (ASP333) (GLU381) [view usage] : c.68.1.18 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |MGS-like |Mannosylglycerate synthase, MGS |Rhodothermus marinus [TaxId: 29549]
d3s9fa_ : (THR124) (ARG143) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania major [TaxId: 5664]
d1wgza_ : (GLN461) (GLY489) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1mr1d_ : (ASP277) (GLU309) [view usage] : d.217.1.2 |SAND domain-like |SAND domain-like |SMAD4-binding domain of oncoprotein Ski |SMAD4-binding domain of oncoprotein Ski |Human (Homo sapiens) [TaxId: 9606]
d1ec9a2 : (GLY58) (ALA92) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |D-glucarate dehydratase |Escherichia coli [TaxId: 562]
d2fnca_ : (ASN156) (GLY205) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2dvta1 : (PRO14) (ASP38) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Thermophilic reversible gamma-resorcylate decarboxylase |Rhizobium sp. MTP-10005 [TaxId: 267998]
d2jq4a1 : (MET1) (ALA23) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |Hypothetical protein Atu2571 |Agrobacterium tumefaciens [TaxId: 358]
d4ubsa_ : (LEU113) (LEU159) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces avermitilis [TaxId: 227882]
d1usyd_ : (VAL134) (LYS157) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d1x8zc_ : (SER2) (LYS24) [view usage] : a.29.6.1 |Bromodomain-like |Plant invertase/pectin methylesterase inhibitor |Plant invertase/pectin methylesterase inhibitor |Pectin methylesterase inhibitor 1, PMEI1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3gfoa_ : (SER99) (GLY130) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
d3domd_ : (ASP13) (ILE62) [view usage] : d.295.1.0 |TFB5-like |TFB5-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4n08a_ : (ASP293) (ARG332) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d2c3ea_ : (ASN73) (ASP143) [view usage] : f.42.1.1 |Mitochondrial carrier |Mitochondrial carrier |Mitochondrial carrier |automated matches |Cow (Bos taurus) [TaxId: 9913]
d4ky0c_ : (ASP298) (ILE353) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d2c12a2 : (SER7) (GLY56) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Nitroalkane oxidase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d4mtdb_ : (SER43) (GLN73) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2jv3a_ : (LYS42) (SER89) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |Ets-1 transcription factor pointed domain |Mouse (Mus musculus) [TaxId: 10090]
d2zmea2 : (ASN177) (LYS203) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d6csca_ : (HIS136) (LYS181) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d4dnja_ : (ALA203) (ALA251) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d2pcja_ : (THR98) (GLY129) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d2g25a1 : (SER477) (ASN508) [view usage] : c.36.1.6 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like Pyr module |Pyruvate dehydrogenase E1 component, Pyr module |Escherichia coli [TaxId: 562]
d2ghbb_ : (VAL336) (GLN376) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1lrra_ : (ILE65) (ASP102) [view usage] : d.228.1.1 |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d2zu0b_ : (GLN383) (LEU418) [view usage] : b.80.6.1 |Single-stranded right-handed beta-helix |Stabilizer of iron transporter SufD |Stabilizer of iron transporter SufD |Stabilizer of iron transporter SufD |Escherichia coli [TaxId: 562]
d2r6ga2 : (SER91) (GLN122) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Maltose transport protein MalK, N-terminal domain |Escherichia coli [TaxId: 562]
d4qs5c_ : (PRO193) (GLY227) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d2m9ga_ : (GLU5) (LEU41) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.69, c.94, a.104, c.2, c.68, d.92, c.72, c.37, c.36, d.178, d.104, c.47, a.103, e.6, a.1, a.4, a.39, d.287,
a.138, a.29, d.54, a.60, a.28, a.209, f.58, f.42, f.49, d.295, d.370, d.228, d.221, d.217