Tableau information
Concept source: d2gm7a1 amino acid (a.a.) range (ASN105)(GLU151)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN105) (LEU121) H1
(GLY123) (GLY146) H2
(GLY146) (GLU151) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -138.3° H2
H3 -143.7° 40.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qpea_ : (LEU181) (GLY256) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d3bofa1 : (ARG327) (GLY353) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1d8ya1 : (LEU421) (LYS467) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Escherichia coli [TaxId: 562]
d1m5ns_ : (LEU3) (LEU33) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1hiwa_ : (LEU68) (ASP121) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1tuxa_ : (PRO92) (ILE120) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d1tgza_ : (PHE442) (GLU467) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d2vfwa_ : (SER86) (HIS117) [view usage] : c.101.1.0 |Undecaprenyl diphosphate synthase |Undecaprenyl diphosphate synthase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4nv0a_ : (SER73) (ASP105) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1b2va_ : (GLY130) (ALA172) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d2h6ca2 : (SER108) (GLU143) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium dehalogenans [TaxId: 36854]
d3uk0a_ : (ASP273) (TYR298) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
d1dkha_ : (VAL131) (THR173) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d1kk6a_ : (PRO90) (PRO109) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1yf9b_ : (VAL130) (GLU162) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Leishmania major [TaxId: 5664]
d3k60a_ : (ALA10) (ASP52) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |automated matches |Plasmodium falciparum [TaxId: 36329]
d2oeqb_ : (PRO64) (ARG113) [view usage] : a.281.1.2 |YheA-like |YheA/YmcA-like |YheA-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d3juva_ : (ASN422) (TYR470) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pkba_ : (THR271) (ASP311) [view usage] : c.19.1.3 |FabD/lysophospholipase-like |FabD/lysophospholipase-like |Patatin |Patatin |Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
d4pxha_ : (MET94) (GLY141) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d1mrla_ : (PRO90) (PRO109) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1d9da1 : (LEU421) (ARG464) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Escherichia coli [TaxId: 562]
d1np7a1 : (PRO263) (ASN315) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome C-terminal domain |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1q80a_ : (ASP71) (ASP104) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Sarcoplasmic calcium-binding protein |Sandworm (Nereis diversicolor) [TaxId: 126592]
d4ki0g_ : (THR244) (VAL294) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalG |Escherichia coli [TaxId: 562]
d1mhsa_ : (SER824) (TYR876) [view usage] : i.18.1.1 |Membrane ion ATPase |Membrane ion ATPase |Membrane ion ATPase |Proton ATPase |Fungus (Neurospora crassa) [TaxId: 5141]
d2lhla_ : (ASP52) (ASN92) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oeqc_ : (PRO64) (PHE115) [view usage] : a.281.1.2 |YheA-like |YheA/YmcA-like |YheA-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1yf9c_ : (VAL130) (GLU162) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Leishmania major [TaxId: 5664]
d2af7f_ : (TYR4) (PRO31) [view usage] : a.152.1.2 |AhpD-like |AhpD-like |CMD-like |Gamma-carboxymuconolactone decarboxylase, CMD |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1yf9a1 : (VAL130) (GLU162) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Leishmania major [TaxId: 5664]
d2hbva1 : (PRO81) (ARG114) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d2io1c_ : (PHE442) (GLU467) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d2io2a_ : (PHE442) (GLU467) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d8gpba_ : (LEU515) (LYS554) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1wzza1 : (PRO261) (GLU338) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Probable endoglucanase CmcAX |Acetobacter xylinus [TaxId: 28448]
d4dm6a_ : (LEU248) (TYR279) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor beta (RAR-beta) |Human (Homo sapiens) [TaxId: 9606]
d1rqwa_ : (ASP147) (GLY162) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Thaumatin |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
d1yeyb2 : (ASP96) (GLU138) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |RTS beta protein |Xanthomonas campestris pv. campestris [TaxId: 340]
d2gf5a1 : (VAL158) (GLY191) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |FADD (Mort1) |Human (Homo sapiens) [TaxId: 9606]
d1hiwq_ : (LEU68) (GLN108) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1iipa1 : (VAL216) (GLU298) [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |Cyclophilin 40 |Cow (Bos taurus) [TaxId: 9913]
d4l4ca_ : (ILE99) (LEU127) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
d2ff2b_ : (SER220) (ARG252) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
d3rlfg_ : (THR244) (VAL294) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ifqa_ : (GLY100) (ILE127) [view usage] : d.110.4.1 |Profilin-like |SNARE-like |Synatpobrevin N-terminal domain |Sec22b |Mouse (Mus musculus) [TaxId: 10090]
d1hiwr_ : (LEU64) (GLN117) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d4pwva_ : (MSE94) (GLY141) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d2blra_ : (ASP147) (GLY162) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
d2rdwa_ : (CYS7) (TRP47) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3puvg_ : (THR244) (VAL294) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2o5ka1 : (TYR140) (GLY176) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d3aoka_ : (ASP147) (GLY162) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
d2fefb2 : (ILE165) (ALA214) [view usage] : a.254.1.1 |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |Hypothetical protein PA2201 |Pseudomonas aeruginosa [TaxId: 287]
d4pk9a_ : (THR271) (ASP311) [view usage] : c.19.1.3 |FabD/lysophospholipase-like |FabD/lysophospholipase-like |Patatin |Patatin |Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
d4ek1b_ : (PRO175) (GLN213) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, b.81, a.104, a.118, c.108, a.102, c.93, d.122, d.144, c.55, d.3, c.87, a.132, a.123, d.20, d.110, c.101, f.24, c.19,
b.25, a.152, a.39, d.54, a.99, a.77, a.61, c.70, f.58, a.281, i.18, d.35, a.254