Tableau information
Concept source: d3fjua_ amino acid (a.a.) range (PRO113)(TYR165)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO113) (THR119) H1
(ASN123) (TRP126) H2
(SER162) (TYR165) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -147.1° H2
H3 117.3° -54.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ix0a4 : (TYR502) (LYS557) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d2o9da_ : (PRO187) (GLU228) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin Z |Escherichia coli [TaxId: 562]
d4q59a1 : (ASN122) (ASP148) [view usage] : a.40.1.1 |CH domain-like |Calponin-homology domain, CH-domain |Calponin-homology domain, CH-domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jb0l_ : (GLY66) (SER114) [view usage] : f.31.1.1 |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Synechococcus elongatus [TaxId: 32046]
d1vf6b_ : (LEU10) (LEU68) [view usage] : a.194.1.1 |L27 domain |L27 domain |L27 domain |Associated tight junction protein Pals-1 |Human (Homo sapiens) [TaxId: 9606]
d3jw0d_ : (HIS857) (LEU896) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3h1jw_ : (ALA4) (GLU60) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2rfka2 : (THR219) (GLU251) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |automated matches |Pyrococcus furiosus [TaxId: 2261]
d3cv8a_ : (PRO166) (ALA221) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces griseolus [TaxId: 1909]
d1apaa_ : (LYS185) (ALA222) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Pokeweed antiviral protein alpha |Pokeweed (Phytolacca americana) [TaxId: 3527]
d1ntfa_ : (THR181) (GLU206) [view usage] : d.151.1.2 |DNase I-like |DNase I-like |Inositol polyphosphate 5-phosphatase (IPP5) |Salivary nitrophorin |Bedbug (Cimex lectularius) [TaxId: 79782]
d1cjca1 : (LEU231) (ALA268) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Adrenodoxin reductase of mitochondrial p450 systems |Cow (Bos taurus) [TaxId: 9913]
d4kysb_ : (ASN307) (ALA335) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Clostridium botulinum [TaxId: 441770]
d1jkya1 : (ARG230) (ARG263) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1wl2a_ : (PRO178) (SER229) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Thermotoga maritima [TaxId: 243274]
d4l1ya_ : (ALA180) (GLN207) [view usage] : d.151.1.2 |DNase I-like |DNase I-like |Inositol polyphosphate 5-phosphatase (IPP5) |automated matches |Bedbug (Cimex lectularius) [TaxId: 79782]
d1vjga_ : (LEU172) (PHE205) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d2a2oa_ : (THR136) (LEU175) [view usage] : a.132.1.3 |Heme oxygenase-like |Heme oxygenase-like |TENA/THI-4 |Hypothetical protein BT3146 |Bacteroides thetaiotaomicron [TaxId: 818]
d1z8hc_ : (SER169) (TRP204) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d3fjua_ : (PRO113) (TYR165) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mqda1 : (THR109) (SER141) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2fonb3 : (ARG620) (ASP642) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d1by1a_ : (GLY137) (ARG196) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |beta-pix |Human (Homo sapiens) [TaxId: 9606]
d2owia_ : (PHE83) (GLU131) [view usage] : a.91.1.0 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xmea_ : (GLY334) (SER368) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d2f6ka1 : (PRO271) (LEU305) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative amidohydrolase LP2961 |Lactobacillus plantarum [TaxId: 1590]
d2vjrb_ : (ASP3) (ASN47) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Gloeobacter violaceus [TaxId: 33072]
d2cexa_ : (ALA69) (SER88) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d1qi7a_ : (ARG181) (GLY217) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Saporin So6 |Common soapwort (Saponaria officinalis) [TaxId: 3572]
d2vwja2 : (ARG709) (GLY749) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermococcus gorgonarius [TaxId: 71997]
d4l1za_ : (ASN179) (GLU206) [view usage] : d.151.1.2 |DNase I-like |DNase I-like |Inositol polyphosphate 5-phosphatase (IPP5) |automated matches |Bedbug (Cimex lectularius) [TaxId: 79782]
d1vp7a_ : (GLU21) (LEU80) [view usage] : a.7.13.1 |Spectrin repeat-like |XseB-like |XseB-like |Exonuclease VII small subunit XseB |Bordetella pertussis [TaxId: 520]
d3e2ta_ : (LYS112) (TYR186) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4g71a_ : (GLY331) (SER368) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d3qt3a_ : (ILE309) (PHE337) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d1vf6a_ : (LEU13) (ILE67) [view usage] : a.194.1.1 |L27 domain |L27 domain |L27 domain |Associated tight junction protein Pals-1 |Human (Homo sapiens) [TaxId: 9606]
d2zbya_ : (PRO166) (ALA221) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces griseolus [TaxId: 1909]
d1jdbb4 : (GLN644) (ARG676) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains |Escherichia coli [TaxId: 562]
d1ya7q_ : (ALA144) (GLN221) [view usage] : a.24.8.1 |Four-helical up-and-down bundle |Proteasome activator |Proteasome activator |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2zbza_ : (ASP169) (ALA221) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces griseolus [TaxId: 1909]
d1rl0a_ : (ARG182) (GLY218) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Dianthin 30 |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
d2f84a1 : (ALA66) (ALA98) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
d2c7jb_ : (ASP3) (ALA48) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |automated matches |Mastigocladus laminosus [TaxId: 83541]
d3spya2 : (SER523) (ASN572) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.94, a.104, a.128, c.56, a.102, d.92, d.165, c.23, b.40, d.178, c.95, d.151, a.132, f.24, a.1, c.3, c.30, a.29,
a.91, f.19, d.148, a.87, a.40, a.24, d.265, a.7, f.23, a.194, f.31