Tableau information
Concept source: d4nhza2 amino acid (a.a.) range (PHE139)(GLY198)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE139) (GLU145) H1
(LYS147) (ASP169) H2
(THR180) (GLY198) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -129.4° H2
H3 -42.1° -138.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1alaa_ : (GLU169) (SER217) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin V |Chicken (Gallus gallus) [TaxId: 9031]
d2zkrv1 : (LYS5) (VAL60) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d3o0ga_ : (SER159) (ASN197) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK5 |Human (Homo sapiens) [TaxId: 9606]
d1iura_ : (ILE14) (PHE75) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |Hypothetical protein KIAA0730 |Human (Homo sapiens) [TaxId: 9606]
d2q9qd1 : (ASN155) (GLY192) [view usage] : a.278.1.3 |GINS helical bundle-like |GINS helical bundle-like |PSF3 C-terminal domain-like |GINS complex subunit 3, PSF3 |Human (Homo sapiens) [TaxId: 9606]
d1m7sb_ : (PHE163) (SER203) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Pseudomonas syringae [TaxId: 317]
d1v0da_ : (ILE88) (VAL129) [view usage] : d.4.1.7 |His-Me finger endonucleases |His-Me finger endonucleases |Caspase-activated DNase, CAD (DffB, DFF40) |Caspase-activated DNase, CAD (DffB, DFF40) |Mouse (Mus musculus) [TaxId: 10090]
d2i9ca1 : (THR81) (ASP117) [view usage] : a.118.1.25 |alpha-alpha superhelix |ARM repeat |RPA1889-like |Hypothetical protein RPA1889 |Rhodopseudomonas palustris [TaxId: 1076]
d4jyba_ : (ASP7) (VAL48) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d1iapa_ : (SER48) (GLY85) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |p115RhoGEF |Human (Homo sapiens) [TaxId: 9606]
d4h3zb_ : (ALA206) (LYS254) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d4jycc_ : (MET8) (VAL48) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d2iyoa2 : (ASN388) (SER435) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Lactococcus lactis [TaxId: 1358]
d3bula1 : (ALA652) (ALA686) [view usage] : a.46.1.1 |Methionine synthase domain-like |Methionine synthase domain |Methionine synthase domain |Methionine synthase domain |Escherichia coli [TaxId: 562]
d1lqtb1 : (ASN157) (ARG189) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Ferredoxin:NADP reductase FprA |Mycobacterium tuberculosis [TaxId: 1773]
d1ukla_ : (LEU129) (SER170) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Mouse (Mus musculus) [TaxId: 10090]
d1sfkb_ : (PRO42) (ASN95) [view usage] : a.190.1.1 |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Kunjin virus [TaxId: 11077]
d1gw6a1 : (MET564) (LYS608) [view usage] : a.118.1.7 |alpha-alpha superhelix |ARM repeat |Leukotriene A4 hydrolase C-terminal domain |Leukotriene A4 hydrolase C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1sfkh_ : (PRO42) (ASN95) [view usage] : a.190.1.1 |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Flavivirus capsid protein C |Kunjin virus [TaxId: 11077]
d1wixa_ : (PRO110) (SER157) [view usage] : a.40.3.1 |CH domain-like |Hook domain |Hook domain |Hook homolog 1, Hook1 |Mouse (Mus musculus) [TaxId: 10090]
d2pf4c_ : (GLY396) (ASP440) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d1unla_ : (SER159) (ASN197) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cyclin-dependent PK, CDK5 |Human (Homo sapiens) [TaxId: 9606]
d1ueoa_ : (GLY27) (LYS59) [view usage] : j.107.1.1 |Penaeidin-3a |Penaeidin-3a |Penaeidin-3a |Penaeidin-3a |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d2yd0a4 : (THR768) (THR808) [view usage] : a.118.1.26 |alpha-alpha superhelix |ARM repeat |ERAP1 C-terminal-like |ERAP1 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2ckdb_ : (THR16) (ASP59) [view usage] : c.66.1.57 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |ML2640-like |automated matches |Mycobacterium leprae [TaxId: 1769]
d4dj4a_ : (LYS79) (GLN154) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d1uuza_ : (ARG5) (ALA36) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d2ic8a1 : (VAL211) (LEU270) [view usage] : f.51.1.1 |Rhomboid-like |Rhomboid-like |Rhomboid-like |GlpG |Escherichia coli [TaxId: 562]
d3zmka2 : (ILE163) (ASN218) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Anopheles funestus [TaxId: 62324]
d1hi8a_ : (ASN517) (ALA578) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1gpja3 : (GLU80) (GLU139) [view usage] : d.58.39.1 |Ferredoxin-like |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Methanopyrus kandleri [TaxId: 2320]
d1ejli_ : (SER77) (ALA118) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
d1e1eb_ : (ALA42) (MET79) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d2ie3a_ : (GLY396) (GLU441) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d1iqra1 : (SER213) (PRO259) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |C-terminal domain of DNA photolyase |Thermus thermophilus [TaxId: 274]
d1a32a_ : (SER23) (GLY85) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Bacillus stearothermophilus [TaxId: 1422]
d1lrva_ : (THR209) (GLY239) [view usage] : a.118.1.5 |alpha-alpha superhelix |ARM repeat |Leucine-rich repeat variant |Leucine-rich repeat variant |Azotobacter vinelandii [TaxId: 354]
d2hyec2 : (THR59) (GLU123) [view usage] : a.118.17.1 |alpha-alpha superhelix |Cullin repeat-like |Cullin repeat |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d2c3na2 : (PRO130) (PRO189) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gnia_ : (SER11) (ASN76) [view usage] : a.118.1.15 |alpha-alpha superhelix |ARM repeat |Mo25 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f66b1 : (THR30) (ALA101) [view usage] : a.2.17.2 |Long alpha-hairpin |Endosomal sorting complex assembly domain |VPS28 N-terminal domain |Vacuolar protein sorting-associated protein 28, VPS28 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sqma1 : (ALA563) (LYS608) [view usage] : a.118.1.7 |alpha-alpha superhelix |ARM repeat |Leukotriene A4 hydrolase C-terminal domain |Leukotriene A4 hydrolase C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1nfie_ : (SER76) (PHE106) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |I-kappa-B-alpha |Human (Homo sapiens) [TaxId: 9606]
d2ckda1 : (THR12) (MET57) [view usage] : c.66.1.57 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |ML2640-like |Putative methyltransferase ML2640 |Mycobacterium leprae [TaxId: 1769]
d3a8ia1 : (SER244) (HIS275) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2jlga_ : (ASN517) (ALA578) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1s1ix_ : (ALA6) (ASN59) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ehod1 : (ARG147) (LYS191) [view usage] : a.278.1.3 |GINS helical bundle-like |GINS helical bundle-like |PSF3 C-terminal domain-like |GINS complex subunit 3, PSF3 |Human (Homo sapiens) [TaxId: 9606]
d1avha_ : (ASP168) (GLY218) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin V |Human (Homo sapiens) [TaxId: 9606]
d2d3ow1 : (PRO3) (GLN66) [view usage] : a.2.2.1 |Long alpha-hairpin |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Deinococcus radiodurans [TaxId: 1299]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.5, c.1, d.58, i.1, a.118, c.66, a.65, d.144, c.37, d.211, c.116, d.250, a.100, c.3, a.45, a.91, f.51, a.124, a.40,
a.99, d.4, a.278, a.2, a.16, d.233, a.46, a.190, j.107