Tableau information
Concept source: d2prrc_ amino acid (a.a.) range (ARG47)(ALA92)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG47) (LEU63) H1
(THR69) (ASN84) H2
(CYS86) (ALA92) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 129.2° H2
H3 -40.9° -153.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fcxa_ : (ASP309) (GLU355) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d2e9fa_ : (VAL85) (LEU193) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1mmfa_ : (ASN453) (GLY500) [view usage] : c.1.19.3 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Diol dehydratase, alpha subunit |Diol dehydratase, alpha subunit |Klebsiella pneumoniae [TaxId: 573]
d1gyta2 : (ALA179) (ILE219) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Escherichia coli, PepA [TaxId: 562]
d4ogwa_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1pn5a1 : (SER107) (GLN145) [view usage] : a.77.1.5 |DEATH domain |DEATH domain |Pyrin domain, PYD |NALP1 |Human (Homo sapiens) [TaxId: 9606]
d3j39n_ : (THR165) (ASN196) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1pxza_ : (ASN2) (THR32) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d4q0nd_ : (MET674) (GLU732) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2p0ma1 : (LEU168) (SER222) [view usage] : a.119.1.2 |Lipoxigenase |Lipoxigenase |Animal lipoxigenases |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2ruca_ : (THR35) (ALA72) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Mitotic rotamase PIN1, domain 2 |Human (Homo sapiens) [TaxId: 9606]
d3cpjg1 : (ASN130) (HIS166) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2bxba1 : (GLY207) (ASN267) [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
d4egmb_ : (PHE160) (SER199) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1mr8a_ : (THR3) (LYS49) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]
d3koub_ : (PHE51) (ALA106) [view usage] : c.23.14.0 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3okia_ : (SER362) (GLN412) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b9jc2 : (GLY915) (GLN976) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Xanthine oxidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d4e4ka_ : (MET364) (PRO426) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor gamma, PPAR-gamma |Human (Homo sapiens) [TaxId: 9606]
d2o3sa_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d3jw0c_ : (ILE712) (GLU745) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yoca1 : (SER2) (ILE30) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein PA1835 |Pseudomonas aeruginosa [TaxId: 287]
d3zk9a_ : (ALA117) (LYS166) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2i67b_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d2hcta_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d4q0na_ : (MET674) (GLU732) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r7ab_ : (THR220) (GLN246) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d4trrb_ : (THR191) (GLY224) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d4f46b_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d2yowa_ : (TYR57) (SER85) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Bacillus amyloliquefaciens [TaxId: 1390]
d1iwpa_ : (VAL454) (GLY500) [view usage] : c.1.19.3 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Diol dehydratase, alpha subunit |Diol dehydratase, alpha subunit |Klebsiella pneumoniae [TaxId: 573]
d1sija4 : (GLY534) (LEU592) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d1v7mv_ : (LEU48) (LEU108) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Thrombopoietin |Human (Homo sapiens) [TaxId: 9606]
d2vkdc_ : (ASN5) (TYR63) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2onda1 : (ASP497) (GLY545) [view usage] : a.118.8.7 |alpha-alpha superhelix |TPR-like |HAT/Suf repeat |Cleavage stimulation factor 77 kDa subunit CSTF3 |Mouse (Mus musculus) [TaxId: 10090]
d2amxa1 : (ASN333) (TYR375) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Plasmodium yoelii [TaxId: 5861]
d1peua2 : (ILE422) (HIS465) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1buya_ : (ASN47) (LEU112) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Erythropoietin |Human (Homo sapiens) [TaxId: 9606]
d2i65b_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1ofha_ : (THR5) (VAL48) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |HslU |Haemophilus influenzae [TaxId: 727]
d4dnja_ : (PHE163) (SER202) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d2r7aa_ : (THR220) (GLN246) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Shigella dysenteriae [TaxId: 622]
d1xaxa_ : (VAL92) (GLY143) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |automated matches |Haemophilus influenzae [TaxId: 727]
d4nnoa_ : (ALA117) (LYS189) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1r3ba_ : (ASP167) (GLY211) [view usage] : a.29.7.1 |Bromodomain-like |Mob1/phocein |Mob1/phocein |Mob1a |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2i65a_ : (ARG58) (GLY113) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1e6vb1 : (MET197) (GLU235) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanopyrus kandleri [TaxId: 2320]
d2fd5a2 : (GLU118) (VAL179) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Probable transcriptional regulator PA3133 |Pseudomonas aeruginosa [TaxId: 287]
d4g91b_ : (SER91) (GLU132) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |automated matches |Aspergillus nidulans [TaxId: 227321]
d1i5pa3 : (ASN194) (PHE262) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]
d1nvbb_ : (SER272) (GLY324) [view usage] : e.22.1.1 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Dehydroquinate synthase, DHQS |Dehydroquinate synthase, DHQS |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, a.119, a.104, c.2, i.1, a.118, c.68, c.56, c.92, d.92, a.127, e.22, c.23, c.37, c.7, b.1, a.123, d.133, a.126,
d.38, a.152, a.39, c.3, a.29, f.1, d.148, d.26, a.77, a.26, a.22, a.121, a.89