Tableau information
Concept source: d3eooj_ amino acid (a.a.) range (GLN262)(PHE292)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN262) (MET269) H1
(THR271) (GLY280) H2
(TYR282) (PHE292) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 38.1° H2
H3 -63.4° -49.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1a7ma_ : (GLU154) (PHE180) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Leukemia inhibitory factor (LIF) |Mouse (Mus musculus) [TaxId: 10090]
d1uwra_ : (THR271) (GLY296) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Sulfolobus solfataricus [TaxId: 2287]
d4g2ka_ : (GLN526) (GLY599) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Saccharomyces cerevisiae, lake victoria marburgvirus [TaxId: 4932]
d3k5la1 : (LEU333) (GLY385) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1tw8b_ : (SER29) (PRO68) [view usage] : c.52.1.19 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease HincII |Restriction endonuclease HincII |Haemophilus influenzae [TaxId: 727]
d1rp4a_ : (ASP266) (ASP296) [view usage] : a.227.1.1 |ERO1-like |ERO1-like |ERO1-like |Endoplasmic oxidoreductin 1, Ero1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qapa2 : (ASP9) (PRO50) [view usage] : d.41.2.1 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |NadC N-terminal domain-like |Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d4arxa1 : (ASP222) (TYR255) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1l5va_ : (GLN761) (ALA794) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1khvb_ : (MET310) (ALA347) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Rabbit hemorrhagic disease virus [TaxId: 11976]
d3p2ca_ : (ASN368) (PHE389) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |automated matches |Bacteroides ovatus [TaxId: 411476]
d3h1ht_ : (ASN28) (ARG71) [view usage] : f.23.13.1 |Single transmembrane helix |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1svvb_ : (THR96) (GLY113) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d1svva_ : (THR96) (GLY113) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d3exeb1 : (THR82) (GLY105) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f2fb1 : (SER37) (SER54) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Actinobacillus actinomycetemcomitans [TaxId: 714]
d1dgja4 : (VAL867) (MET905) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio desulfuricans [TaxId: 876]
d1ufoa_ : (ASP152) (TYR170) [view usage] : c.69.1.27 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hypothetical protein TT1662 |Hypothetical protein TT1662 |Thermus thermophilus [TaxId: 274]
d4g2kc_ : (ILE527) (GLY599) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Saccharomyces cerevisiae, lake victoria marburgvirus [TaxId: 4932]
d2q62d_ : (SER192) (SER240) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d3fr8b2 : (LEU308) (GLY325) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |automated matches |Oryza sativa [TaxId: 39947]
d4gaxa1 : (ILE158) (PRO183) [view usage] : a.102.4.0 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |automated matches |automated matches |Artemisia annua [TaxId: 35608]
d2yood_ : (PRO84) (ARG123) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2ve4a_ : (GLY98) (ALA138) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1yk3g_ : (LEU136) (GLU159) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein Rv1347c/MT1389 |Mycobacterium tuberculosis [TaxId: 1773]
d2es0a_ : (GLU423) (LEU452) [view usage] : a.91.1.0 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2dyda_ : (ALA11) (VAL34) [view usage] : a.144.1.0 |PABP domain-like |PABC (PABP) domain |automated matches |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
d2uwfa_ : (GLN238) (GLY258) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus halodurans [TaxId: 86665]
d3v3zl_ : (THR251) (ILE275) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d4arxb1 : (ASP222) (TYR255) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1w07b1 : (LEU410) (ALA461) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Acyl-coenzyme A oxidase 1, domains 3 and 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3l74t_ : (ASN28) (ARG71) [view usage] : f.23.13.1 |Single transmembrane helix |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4e9ea_ : (LYS539) (LYS576) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lj8a3 : (GLN370) (GLY397) [view usage] : a.100.1.9 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Mannitol 2-dehydrogenase |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d1zbma1 : (ARG222) (GLY259) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein AF1704 |Archaeoglobus fulgidus [TaxId: 2234]
d4g2kb_ : (MET524) (GLY599) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Saccharomyces cerevisiae, lake victoria marburgvirus [TaxId: 4932]
d1e4oa_ : (GLU762) (ALA794) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d3p83d_ : (PRO133) (ARG198) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4jfca_ : (THR222) (LYS253) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d2rada1 : (THR220) (ASN246) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d1yzfa1 : (THR51) (LYS67) [view usage] : c.23.10.5 |Flavodoxin-like |SGNH hydrolase |TAP-like |Lipase/acylhydrolase |Enterococcus faecalis [TaxId: 1351]
d3h1hg_ : (ASN28) (ARG71) [view usage] : f.23.13.1 |Single transmembrane helix |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1hbwa_ : (PHE68) (GLY95) [view usage] : h.1.3.1 |Parallel coiled-coil |Leucine zipper domain |Leucine zipper domain |CD2-Gal4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4rc5a_ : (ASN158) (ALA185) [view usage] : a.25.1.6 |Ferritin-like |Ferritin-like |PMT1231-like |automated matches |Synechococcus elongatus [TaxId: 1140]
d4u7ja2 : (ASP368) (GLN398) [view usage] : d.210.1.0 |Argininosuccinate synthetase, C-terminal domain |Argininosuccinate synthetase, C-terminal domain |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d4b6gb_ : (TYR256) (LYS275) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d4rc7a_ : (ASN158) (ALA185) [view usage] : a.25.1.6 |Ferritin-like |Ferritin-like |PMT1231-like |automated matches |Synechococcus elongatus [TaxId: 1140]
d1ahpa_ : (GLN761) (ALA794) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1l6lc_ : (LYS46) (GLY71) [view usage] : h.6.1.1 |Apolipoprotein A-II |Apolipoprotein A-II |Apolipoprotein A-II |Apolipoprotein A-II |Human (Homo sapiens) [TaxId: 9606]
d2ecpa_ : (GLN794) (ALA827) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d3hzsa_ : (LYS169) (MET208) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1z01a2 : (TYR353) (TRP404) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO |Pseudomonas putida [TaxId: 303]
d4dk9a_ : (TYR540) (LEU577) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nxha_ : (MSE49) (GLN76) [view usage] : a.200.1.1 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2vx2b_ : (LEU263) (GLN292) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ntmk_ : (PRO8) (VAL45) [view usage] : f.23.15.1 |Single transmembrane helix |Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d3gu3a_ : (LYS159) (GLY198) [view usage] : c.66.1.49 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |BC2162-like |automated matches |Bacillus cereus [TaxId: 226900]
d3paja1 : (SER-2) (ILE49) [view usage] : d.41.2.0 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3reqb1 : (GLU436) (GLU465) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, c.94, a.104, a.102, c.66, c.14, d.129, c.23, c.36, c.55, d.2, d.151, c.87, f.26, a.96, d.108, d.133,
a.25, c.52, d.41, a.100, h.3, a.29, f.1, a.91, a.26, f.23, a.144, c.150, h.1, a.227, a.200, d.210, h.6