Tableau information
Concept source: d3ak1a1 amino acid (a.a.) range (ASN15)(MET86)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN15) (GLU20) H1
(ILE24) (GLY56) H2
(ASP61) (MET86) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 130.0° H2
H3 64.3° -144.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f2ab1 : (PRO296) (HIS333) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d3iaoa1 : (THR46) (TYR118) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |automated matches |Bacillus subtilis [TaxId: 1423]
d2ksca_ : (ASN32) (ASN76) [view usage] : a.1.1.1 |Globin-like |Globin-like |Truncated hemoglobin |automated matches |Synechococcus sp. [TaxId: 32049]
d3hp0a_ : (PRO144) (GLY179) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2wrbb2 : (GLU403) (SER495) [view usage] : h.3.1.0 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1f51b_ : (ASP214) (THR282) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d1jr3e1 : (PRO271) (GLN324) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |delta prime subunit |Escherichia coli [TaxId: 562]
d1b70a_ : (SER129) (HIS190) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS |Thermus thermophilus [TaxId: 274]
d2qkaa1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jyba_ : (GLU267) (ILE327) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Metallochaperone MeaB |Methylobacterium extorquens [TaxId: 408]
d1n0na1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d2qkca1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1f5ta2 : (THR1065) (LEU1120) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d2oocb_ : (PHE12) (GLY66) [view usage] : a.24.10.6 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |SphA-like |Histidine phosphotransferase ShpA |Caulobacter crescentus [TaxId: 155892]
d3u5cc_ : (THR39) (LEU72) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1pp7u_ : (ASP5) (PRO49) [view usage] : a.4.5.44 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |39 kda initiator binding protein, IBP39, N-terminal domain |39 kda initiator binding protein, IBP39, N-terminal domain |Trichomonas vaginalis [TaxId: 5722]
d1kkca1 : (PRO24) (LEU95) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Aspergillus fumigatus [TaxId: 5085]
d3ak2d1 : (ASN15) (MET86) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1exia1 : (THR46) (TYR118) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Transcription activator BmrR |Bacillus subtilis [TaxId: 1423]
d2f5ca2 : (THR63) (ASP124) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d1pprm1 : (PRO37) (SER98) [view usage] : a.131.1.1 |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Dinoflagellate (Amphidinium carterae) [TaxId: 2961]
d1zuqa1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d2xzm3_ : (ALA2) (ILE40) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1t5ja_ : (ASP61) (GLU110) [view usage] : a.209.1.1 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |Hypothetical protein MJ1187 |Methanococcus jannaschii [TaxId: 2190]
d2nwwa1 : (ASP312) (ALA360) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Pyrococcus horikoshii [TaxId: 53953]
d1vbfa_ : (SER2) (ALA39) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Sulfolobus tokodaii [TaxId: 111955]
d3ak1a1 : (ASN15) (MET86) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d3c07b2 : (ILE164) (PHE228) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator SCO4850 |Streptomyces coelicolor [TaxId: 1902]
d3ak2b1 : (ASN15) (MET86) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1em1a1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d3gm1a_ : (LEU927) (ASN1002) [view usage] : a.24.14.0 |Four-helical up-and-down bundle |FAT domain of focal adhesion kinase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ap5a1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1at9a_ : (GLN3) (LEU61) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
d4r5lc2 : (ALA553) (ALA602) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |automated matches |Escherichia coli [TaxId: 83333]
d1bs2a2 : (GLN195) (GLU234) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Arginyl-tRNA synthetase (ArgRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1c02a_ : (ASN10) (GLY74) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1i58a_ : (LYS456) (VAL488) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d2btva_ : (GLU160) (SER190) [view usage] : e.28.1.1 |Reovirus inner layer core protein p3 |Reovirus inner layer core protein p3 |Orbivirus core |BTV vp3 |Bluetongue virus, strain 1 [TaxId: 40051]
d1pm9a1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d3evka1 : (ALA26) (MET97) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Pyrobaculum aerophilum [TaxId: 13773]
d2jv9a_ : (LYS59) (GLY112) [view usage] : a.40.1.0 |CH domain-like |Calponin-homology domain, CH-domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1g3sa2 : (THR65) (VAL119) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d2j00r1 : (LYS21) (GLY77) [view usage] : a.4.8.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein S18 |Ribosomal protein S18 |Ribosomal protein S18 |Thermus thermophilus [TaxId: 274]
d3g0sb_ : (SER204) (LEU236) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d1ojqa_ : (LEU89) (LEU125) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Staphylococcus aureus [TaxId: 1280]
d1ar4a1 : (ASP11) (MET82) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Cambialistic superoxide dismutase |Propionibacterium shermanii [TaxId: 1752]
d1dnpa1 : (PRO420) (ALA440) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |C-terminal domain of DNA photolyase |Escherichia coli [TaxId: 562]
d4dglb_ : (SER8) (LEU54) [view usage] : g.41.4.1 |Rubredoxin-like |Casein kinase II beta subunit |Casein kinase II beta subunit |Casein kinase II beta subunit |Human (Homo sapiens) [TaxId: 9606]
d1f51a_ : (THR15) (LYS86) [view usage] : d.123.1.1 |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Sporulation response regulatory protein Spo0B |Bacillus subtilis [TaxId: 1423]
d4v19u_ : (LYS82) (ASP134) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1tq6a_ : (PHE240) (ASP290) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Interferon-inducible GTPase |Mouse (Mus musculus) [TaxId: 10090]
d2d26a1 : (THR27) (ASN81) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d1kkcb1 : (PRO24) (LEU95) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Aspergillus fumigatus [TaxId: 5085]
d1xcva2 : (THR65) (VAL119) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1fx7a2 : (THR65) (ASN121) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent regulator |Mycobacterium tuberculosis [TaxId: 1773]
d4u7ja2 : (PRO275) (GLU333) [view usage] : d.210.1.0 |Argininosuccinate synthetase, C-terminal domain |Argininosuccinate synthetase, C-terminal domain |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d2amxa1 : (SER63) (TYR115) [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Plasmodium yoelii [TaxId: 5861]
d1ztea1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1zspa1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1xqoa_ : (ASP172) (THR210) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d1pprm2 : (SER199) (SER260) [view usage] : a.131.1.1 |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Dinoflagellate (Amphidinium carterae) [TaxId: 2961]
d3bfra1 : (ASP18) (LEU96) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1eiya2 : (PHE134) (VAL188) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS |Thermus thermophilus [TaxId: 274]
d4kdsa_ : (ASN4) (GLY60) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
d3gbrb2 : (ALA150) (ASN181) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d2p4ka1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1luwa1 : (ASP10) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d9paia_ : (PRO23) (GLY81) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d1xqpa_ : (ASP172) (GLU209) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d4f5sa1 : (LEU80) (LYS106) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3u5ch_ : (PRO4) (PRO40) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1p7ga1 : (ALA26) (MSE97) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Pyrobaculum aerophilum [TaxId: 13773]
d4k29b_ : (LEU147) (ILE176) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d2w7da_ : (ALA361) (ASP405) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d3rn4a1 : (ASP18) (LEU96) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2aexa_ : (ASP121) (ASP171) [view usage] : d.248.1.0 |Coproporphyrinogen III oxidase |Coproporphyrinogen III oxidase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, i.1, c.26, c.66, c.14, d.122, c.37, d.104, d.166, d.248, a.96, a.126, e.1, a.1, a.4, f.13, h.3, a.40, a.99,
a.24, c.27, g.41, a.80, a.209, a.8, a.6, a.2, f.49, a.76, a.121, a.182, d.123, d.210, e.28, a.131