Tableau information
Concept source: d218la_ amino acid (a.a.) range (GLY107)(SER136)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY107) (THR115) H1
(THR115) (LEU121) H2
(TRP126) (SER136) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 61.1° H2
H3 141.5° -136.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ej5a_ : (ALA43) (SER93) [view usage] : a.68.1.1 |Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2ajqa1 : (ASP188) (SER208) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of T7 DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d1xtna_ : (TYR45) (HIS104) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |Serine/threonine-protein kinase Sgk3, Cisk |Mouse (Mus musculus) [TaxId: 10090]
d3weka_ : (PRO232) (ILE270) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4a17v_ : (ASN163) (LEU199) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2etta_ : (TYR52) (LEU113) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1udya2 : (THR17) (GLY60) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Pig (Sus scrofa) [TaxId: 9823]
d3pfdc1 : (HIS19) (GLY59) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d1vhla_ : (LEU47) (LEU88) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Dephospho-CoA kinase |Escherichia coli [TaxId: 562]
d3ehna_ : (ASP99) (VAL153) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1ruzi_ : (ARG575) (ASN654) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d1qzpa_ : (SER43) (SER74) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |Dematin |Human (Homo sapiens) [TaxId: 9606]
d3dc6a1 : (LEU14) (LEU81) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1vara1 : (LEU14) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Human (Homo sapiens) [TaxId: 9606]
d1gn2a1 : (LEU16) (LEU83) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Mycobacterium tuberculosis [TaxId: 1773]
d1fpsa_ : (SER20) (PRO68) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Farnesyl diphosphate synthase (geranyltranstransferase) |Chicken (Gallus gallus) [TaxId: 9031]
d1n1ha_ : (SER2) (PHE37) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Reovirus polymerase lambda3 |Reovirus [TaxId: 10891]
d4gunp1 : (LEU20) (LEU87) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d4lh7a_ : (PRO179) (ARG220) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1nkta4 : (VAL500) (GLY548) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Mycobacterium tuberculosis [TaxId: 1773]
d3dc6c1 : (LEU14) (LEU81) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3sdpa1 : (LEU14) (LEU81) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Pseudomonas ovalis [TaxId: 303]
d1c8qa2 : (SER132) (ASP159) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
d2gz4d_ : (PRO76) (GLY123) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d1ta4a2 : (GLY168) (ARG209) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Aspartate beta-semialdehyde dehydrogenase |Haemophilus influenzae [TaxId: 727]
d1t12a_ : (CYS4) (ALA38) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3wc9b_ : (GLU234) (ILE270) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sn2a2 : (SER690) (THR723) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1c7ia_ : (THR222) (LYS267) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d1zv6a_ : (SER43) (GLU74) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nsgb_ : (THR2064) (SER2112) [view usage] : a.24.7.1 |Four-helical up-and-down bundle |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |Human (Homo sapiens) [TaxId: 9606]
d3jsla_ : (PRO171) (ARG212) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Staphylococcus aureus [TaxId: 1280]
d1rx0c2 : (ASN20) (GLN61) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isobutyryl-CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d2ve4a_ : (GLY161) (GLN217) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d2r6gf2 : (TYR381) (PHE438) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalF |Escherichia coli [TaxId: 562]
d2gftb_ : (LEU333) (PHE364) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus licheniformis [TaxId: 1402]
d2bvla1 : (LEU137) (GLU196) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Toxin B |Clostridium difficile [TaxId: 1496]
d4br6a1 : (LEU14) (LEU81) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1x1pa1 : (PRO31) (VAL59) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Pyrococcus horikoshii [TaxId: 53953]
d4mcka_ : (TRP104) (VAL145) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
d1dhka2 : (SER132) (ARG158) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
d3u5ef_ : (ASN166) (LEU202) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1rx0a2 : (ASN20) (GLN61) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isobutyryl-CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d3dc5a1 : (LEU14) (LEU81) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3srza_ : (VAL137) (GLN192) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3pfda1 : (GLU18) (GLY59) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d4gkfa_ : (GLU103) (ALA156) [view usage] : a.70.2.0 |ATPD N-terminal domain-like |AF1862-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d4i78c_ : (LEU75) (GLY155) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d2keoa_ : (ASP50) (CYS94) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vkxb2 : (THR443) (MET505) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1psya_ : (GLY44) (ARG74) [view usage] : a.52.1.3 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Seed storage protein, 2S albumin |2S albumin RicC3 |Castor bean (Ricinus communis) [TaxId: 3988]
d3weia_ : (PRO232) (ILE270) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q2za_ : (PRO232) (HIS268) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1aqla_ : (PRO233) (ALA269) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Cow (Bos taurus) [TaxId: 9913]
d3dc5c1 : (LEU14) (LEU81) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2q16a_ : (GLY82) (MSE106) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3qvna1 : (LEU20) (LEU87) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1jxja2 : (SER132) (ASP159) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
d4jund_ : (ARG75) (GLY155) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus [TaxId: 365085]
d2gfta_ : (LEU333) (PHE364) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus licheniformis [TaxId: 1402]
d1gvnb_ : (ASN66) (GLY110) [view usage] : c.37.1.21 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Plasmid maintenance system epsilon/zeta, toxin zeta subunit |Streptococcus pyogenes [TaxId: 1314]
d1auea_ : (THR2065) (LYS2114) [view usage] : a.24.7.1 |Four-helical up-and-down bundle |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |Human (Homo sapiens) [TaxId: 9606]
d2jula_ : (THR128) (TYR174) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1hw7a_ : (ASP185) (LEU214) [view usage] : d.193.1.1 |Hsp33 domain |Hsp33 domain |Hsp33 domain |Heat shock protein 33, Hsp33 |Escherichia coli [TaxId: 562]
d1ma1a1 : (LEU20) (ASN86) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe superoxide dismutase (FeSOD) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4e38a_ : (THR180) (PRO209) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Vibrionales bacterium [TaxId: 391574]
d2a1tc2 : (THR17) (GLY60) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ehnb_ : (ASP99) (VAL153) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1p5xa_ : (PRO172) (GLY243) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Bacterial phosholipase C |Bacillus cereus [TaxId: 1396]
d1ybda1 : (GLY58) (THR84) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Uridylate kinase PyrH |Neisseria meningitidis [TaxId: 487]
d4guna1 : (LEU20) (LEU87) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3nxqb_ : (LEU105) (LYS172) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ukwa2 : (THR37) (GLY80) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Thermus thermophilus [TaxId: 274]
d1mb4a2 : (GLY167) (ARG208) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Aspartate beta-semialdehyde dehydrogenase |Vibrio cholerae [TaxId: 666]
d1aueb_ : (THR2065) (GLN2115) [view usage] : a.24.7.1 |Four-helical up-and-down bundle |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |Human (Homo sapiens) [TaxId: 9606]
d1de5a_ : (ASN341) (LEU390) [view usage] : c.1.15.2 |TIM beta/alpha-barrel |Xylose isomerase-like |L-rhamnose isomerase |L-rhamnose isomerase |Escherichia coli [TaxId: 562]
d4lh6a_ : (PRO179) (ARG220) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, a.104, i.1, a.118, c.68, a.128, d.92, a.211, c.37, c.55, e.6, d.2, d.81, b.2, c.73, c.8, c.51, d.142,
a.39, h.3, d.193, a.124, a.24, d.120, a.14, a.52, f.58, a.2, d.189, a.70, a.68