Tableau information
Concept source: d1x86g1 amino acid (a.a.) range (GLU866)(LYS904)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU866) (TRP871) H1
(PRO875) (GLN891) H2
(GLN891) (LYS904) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 45.7° H2
H3 57.5° 36.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qpea_ : (VAL11) (ASN48) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d4h0pb2 : (SER281) (LEU309) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cryptococcus neoformans [TaxId: 5207]
d1clea_ : (PRO249) (SER280) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d3po4a2 : (VAL453) (ARG523) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermus aquaticus [TaxId: 271]
d3g1qa_ : (PRO99) (GLN140) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4dqqa2 : (ASP496) (ALA565) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d4btna_ : (LYS171) (SER199) [view usage] : a.135.1.1 |Tetraspanin |Tetraspanin |Tetraspanin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p2ea1 : (LEU4) (LYS51) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella frigidimarina [TaxId: 56812]
d1zt4c2 : (LYS51) (MET87) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1a [TaxId: 9606]
d1hcia1 : (SER363) (LEU396) [view usage] : a.7.1.1 |Spectrin repeat-like |Spectrin repeat |Spectrin repeat |alpha-actinin |Human (Homo sapiens) [TaxId: 9606]
d1llfa_ : (PRO249) (ALA281) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d1hyga2 : (ASP289) (LEU313) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |MJ0490, lactate/malate dehydrogenase |Methanococcus jannaschii [TaxId: 2190]
d2kyha_ : (GLY12) (TYR46) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Aeropyrum pernix [TaxId: 56636]
d3eyza2 : (LYS498) (LEU564) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d3d9wa_ : (ASN12) (ALA48) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d2o3ea_ : (GLN251) (LEU281) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1tj7b_ : (ARG7) (GLY48) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Escherichia coli [TaxId: 562]
d2fv5a_ : (HIS444) (CYS469) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1vsao1 : (VAL9) (HIS72) [view usage] : a.144.2.1 |PABP domain-like |Ribosomal protein L20 |Ribosomal protein L20 |Ribosomal protein L20 |Thermus thermophilus [TaxId: 274]
d2owsa_ : (ALA303) (ASN323) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Bordetella pertussis [TaxId: 257313]
d4dr0b_ : (THR18) (THR43) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4guza_ : (ASN3) (ASN39) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1kywa1 : (SER15) (LYS50) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2idgb_ : (PRO61) (MSE112) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |Hypothetical protein AF0160 |Archaeoglobus fulgidus [TaxId: 2234]
d1zhwa_ : (TYR64) (GLY105) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sjja_ : (TRP30) (GLY105) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Actinin |Chicken (Gallus gallus) [TaxId: 9031]
d1g1ub_ : (LEU422) (ALA457) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoid-X receptor alpha (RXR-alpha) |Human (Homo sapiens) [TaxId: 9606]
d1x86e1 : (GLY865) (LYS904) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 12 |Human (Homo sapiens), gamma isoform [TaxId: 9606]
d1n83a_ : (HIS261) (THR302) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ROR-alpha |Human (Homo sapiens) [TaxId: 9606]
d3eofa_ : (PRO201) (GLY244) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d2idga1 : (PRO61) (GLN111) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |Hypothetical protein AF0160 |Archaeoglobus fulgidus [TaxId: 2234]
d3eofb_ : (LEU200) (GLY244) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d4v19u_ : (ARG17) (GLY80) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d4g9sa_ : (SER17) (TYR48) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic salmon (Salmo salar) [TaxId: 8030]
d1an2a_ : (ASP23) (LEU102) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Max protein |Mouse (Mus musculus) [TaxId: 10090]
d2xolb_ : (PRO61) (HIS90) [view usage] : a.184.1.1 |TorD-like |TorD-like |TorD-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1w5ca_ : (ILE248) (ASN296) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1nkpb_ : (LYS203) (LEU281) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Max protein |Human (Homo sapiens) [TaxId: 9606]
d4bwja2 : (VAL453) (LEU522) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermus aquaticus [TaxId: 271]
d3m8ra2 : (VAL453) (LEU522) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d1bmfa1 : (THR380) (PHE406) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase alpha subunit, domain 3 |Cow (Bos taurus) [TaxId: 9913]
d3u5en_ : (ASP153) (GLY173) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1v9db_ : (HIS1014) (ASN1058) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Diaphanous protein homolog 1, dia1 |Mouse (Mus musculus) [TaxId: 10090]
d1koba_ : (PRO320) (HIS357) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Twitchin, kinase domain |California sea hare (Aplysia californica), twk43 [TaxId: 6500]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, c.94, a.104, i.1, d.92, a.127, d.144, c.55, i.15, d.2, d.3, i.5, a.123, a.25, d.19, f.24, a.4, d.90, d.162,
a.138, a.87, d.338, a.7, a.184, a.38, a.69, a.144, a.135, f.14, a.207