Tableau information
Concept source: d2gnvb_ amino acid (a.a.) range (ARG97)(LYS162)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG97) (GLY112) H1
(GLY114) (PRO134) H2
(SER139) (LYS162) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 109.7° H2
H3 -83.7° 153.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1trla_ : (GLY259) (GLY314) [view usage] : j.78.1.1 |C-terminal fragment of thermolysin |C-terminal fragment of thermolysin |C-terminal fragment of thermolysin |C-terminal fragment of thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d1espa_ : (LYS261) (GLY315) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Neutral protease |Bacillus cereus, strain dsm 3101 [TaxId: 1396]
d1f1sa1 : (GLU572) (LEU610) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Hyaluronate lyase |Streptococcus agalactiae [TaxId: 1311]
d1fj3a_ : (ARG260) (GLY314) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d1t3ta1 : (GLN169) (ASN213) [view usage] : a.5.10.1 |RuvA C-terminal domain-like |FGAM synthase PurL, linker domain |FGAM synthase PurL, linker domain |FGAM synthase PurL, linker domain |Salmonella typhimurium [TaxId: 90371]
d1qyia_ : (ALA266) (ASN307) [view usage] : c.108.1.13 |HAD-like |HAD-like |Hypothetical protein MW1667 (SA1546) |Hypothetical protein MW1667 (SA1546) |Staphylococcus aureus [TaxId: 1280]
d1iw7c_ : (LEU195) (ASP223) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1rjva_ : (SER2) (GLY35) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Human (Homo sapiens) [TaxId: 9606]
d1hlma_ : (VAL92) (ALA157) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, different isoforms |Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]
d1jgna_ : (GLY1) (GLN22) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |poly(A) binding protein |Human (Homo sapiens) [TaxId: 9606]
d3hrva_ : (SER30) (LYS85) [view usage] : d.24.1.2 |Pili subunits |Pili subunits |TcpA-like pilin |Toxin-coregulated pilus subunit TcpA |Vibrio cholerae [TaxId: 666]
d1x1ha1 : (HIS340) (ASP377) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |automated matches |Bacillus sp. [TaxId: 84635]
d3nqyb_ : (GLN450) (GLY499) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Pseudoalteromonas sp. [TaxId: 234831]
d3hl0b_ : (SER303) (GLY347) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1bqba_ : (LYS247) (GLY299) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Aureolysin |Staphylococcus aureus [TaxId: 1280]
d1miya1 : (THR298) (LEU339) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d1qvra1 : (THR84) (GLU134) [view usage] : a.174.1.1 |Double Clp-N motif |Double Clp-N motif |Double Clp-N motif |N-terminal domain of ClpB (heat shock protein F84.1) |Thermus thermophilus [TaxId: 274]
d2k02a_ : (LEU4) (ALA42) [view usage] : a.4.5.62 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein YhgG |automated matches |Klebsiella pneumoniae [TaxId: 72407]
d1b8ca_ : (PHE2) (GLY34) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Carp (Cyprinus carpio) [TaxId: 7962]
d1ezvd1 : (LEU179) (GLU260) [view usage] : a.3.1.3 |Cytochrome c |Cytochrome c |Cytochrome bc1 domain |Cytochrome bc1 domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a03a_ : (SER3) (ASP61) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1zm8a_ : (ASN84) (ALA140) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d2df4a1 : (MET1) (ILE40) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Glutamyl-tRNA(Gln) amidotransferase subunit A |Staphylococcus aureus [TaxId: 1280]
d3wfxb_ : (GLN49) (HIS135) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d3zrci_ : (THR157) (ASP190) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1miva1 : (ASN299) (LEU339) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d3jzda_ : (ALA309) (GLU352) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d4r6ha_ : (PHE353) (THR400) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2ic8a1 : (PRO95) (LEU143) [view usage] : f.51.1.1 |Rhomboid-like |Rhomboid-like |Rhomboid-like |GlpG |Escherichia coli [TaxId: 562]
d1keia_ : (ARG260) (GLY314) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d3wfwa_ : (ARG51) (HIS136) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d1nuba1 : (LEU139) (GLU190) [view usage] : a.39.1.3 |EF Hand-like |EF-hand |Osteonectin |C-terminal (EC) domain of BM-40/SPARC/osteonectin |Human (Homo sapiens) [TaxId: 9606]
d1bccd2 : (TYR115) (GLU195) [view usage] : a.3.1.3 |Cytochrome c |Cytochrome c |Cytochrome bc1 domain |Cytochrome bc1 domain |Chicken (Gallus gallus) [TaxId: 9031]
d3lria_ : (ALA21) (CYS74) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin-like growth factor |Human (Homo sapiens) [TaxId: 9606]
d3f45a_ : (SER1) (GLY34) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3wfxa_ : (GLN49) (HIS135) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d4b52a_ : (GLY247) (GLY302) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Paenibacillus polymyxa [TaxId: 1406]
d1t3wa_ : (LEU482) (HIS541) [view usage] : a.236.1.1 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |Escherichia coli [TaxId: 562]
d3hrvb_ : (SER30) (LYS85) [view usage] : d.24.1.2 |Pili subunits |Pili subunits |TcpA-like pilin |Toxin-coregulated pilus subunit TcpA |Vibrio cholerae [TaxId: 666]
d1oj7a_ : (HIS342) (ARG387) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Hypothetical oxidoreductase yqhD |Escherichia coli [TaxId: 562]
d2yzrb_ : (VAL157) (LEU238) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1fexa_ : (THR6) (LEU54) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Rap1 |Human (Homo sapiens) [TaxId: 9606]
d1xwob_ : (THR56) (LEU107) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anser anser [TaxId: 8844]
d3s48c_ : (LEU80) (SER138) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
d1rq6a_ : (SER7) (LYS62) [view usage] : a.4.15.1 |DNA/RNA-binding 3-helical bundle |Rps17e-like |Rps17e-like |ribosomal protein S17e |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1jt0a2 : (ASN110) (SER187) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Multidrug binding protein QacR |Staphylococcus aureus [TaxId: 1280]
d6inse_ : (ASN3) (GLU17) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin |Pig (Sus scrofa) [TaxId: 9823]
d4gaaa2 : (ARG284) (THR352) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3h1hd1 : (TYR115) (GLU195) [view usage] : a.3.1.3 |Cytochrome c |Cytochrome c |Cytochrome bc1 domain |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2ogbb_ : (SER0) (ALA250) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d1ezma_ : (ASP243) (GLY294) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
d1i6vc_ : (PRO192) (ASP223) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d3q7ja2 : (ALA252) (VAL314) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
d3wxme1 : (LYS37) (ARG68) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1wqji_ : (ALA8) (MET59) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin-like growth factor |Human (Homo sapiens) [TaxId: 9606]
d1i5pa3 : (PHE24) (GLY66) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]
d1asha_ : (ARG82) (ASN145) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Ascaris hemoglobin, domain 1 |Pig roundworm (Ascaris suum) [TaxId: 6253]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.108, c.117, a.102, d.92, a.127, e.22, c.37, a.1, a.4, a.39, a.3, b.3, f.1, f.51, d.4, d.24, a.174, a.144,
a.121, e.29, a.5, a.173, a.236, d.345, g.1, j.78