Tableau information
Concept source: d1f12a2 amino acid (a.a.) range (GLU48)(THR87)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU48) (SER54) H1
(LYS55) (PHE70) H2
(PRO74) (THR87) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -16.3° H2
H3 146.0° 148.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1weka_ : (ASP169) (LEU196) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d1mdva_ : (GLY64) (LEU97) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
d1f0jb_ : (VAL231) (ILE273) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b |Human (Homo sapiens) [TaxId: 9606]
d1jb0f_ : (PHE63) (ILE101) [view usage] : f.23.16.1 |Single transmembrane helix |Subunit III of photosystem I reaction centre, PsaF |Subunit III of photosystem I reaction centre, PsaF |Subunit III of photosystem I reaction centre, PsaF |Synechococcus elongatus [TaxId: 32046]
d2cvza1 : (GLY159) (SER203) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |Hydroxyisobutyrate dehydrogenase |Thermus thermophilus [TaxId: 274]
d1m0zb_ : (ASN210) (GLN247) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d2l6ea_ : (VAL141) (ARG167) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1n69a_ : (MET43) (LEU73) [view usage] : a.64.1.3 |Saposin-like |Saposin |Saposin B |Saposin B |Human (Homo sapiens) [TaxId: 9606]
d2ahjd_ : (ALA30) (MET62) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d2fpva_ : (ASP34) (GLY66) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1kkqa_ : (LYS349) (ILE383) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d1yywa1 : (THR38) (SER76) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d1ro9a_ : (VAL231) (ILE273) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b |Human (Homo sapiens) [TaxId: 9606]
d3exea_ : (ARG275) (ASP327) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d2w2db2 : (VAL689) (ASN763) [view usage] : h.4.2.1 |Antiparallel coiled-coil |Clostridium neurotoxins, "coiled-coil" domain |Clostridium neurotoxins, "coiled-coil" domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d4fjvc_ : (SER68) (ARG96) [view usage] : d.3.1.11 |Cysteine proteinases |Cysteine proteinases |Ubiquitin thiolesterase protein OTUB2 (Otubain-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dqra_ : (GLY270) (ARG307) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1ssda_ : (THR177) (SER203) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Chicken (Gallus gallus) [TaxId: 9031]
d4dr0b_ : (GLN186) (ALA228) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4kk2a_ : (LEU184) (VAL219) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Artemisia spiciformis [TaxId: 235357]
d2gboa1 : (MSE1) (GLN82) [view usage] : a.23.6.1 |Open three-helical up-and-down bundle |EF2458-like |EF2458-like |Hypothetical protein EF2458 |Enterococcus faecalis [TaxId: 1351]
d2heka1 : (GLU145) (LEU189) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein aq_1910 |Aquifex aeolicus [TaxId: 63363]
d1ni4a_ : (GLU276) (ALA324) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d3fr7a2 : (LEU308) (GLY358) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |automated matches |Oryza sativa [TaxId: 39947]
d1yb4a2 : (GLY163) (GLY207) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d1ro6a_ : (VAL231) (ILE273) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b |Human (Homo sapiens) [TaxId: 9606]
d1wgza_ : (SER341) (ASP400) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4hv6a2 : (THR63) (GLY100) [view usage] : a.76.1.1 |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |Iron-dependent repressor protein, dimerization domain |automated matches |Bacillus subtilis [TaxId: 224308]
d1dxrl_ : (ASN170) (VAL220) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodopseudomonas viridis [TaxId: 1079]
d1arha_ : (ARG316) (GLN356) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d1mdue2 : (GLU255) (ASN298) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Chicken (Gallus gallus) [TaxId: 9031]
d4kqwa2 : (PHE194) (GLU241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Slackia exigua [TaxId: 649764]
d3exfa_ : (GLU277) (ALA326) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d3fr7b2 : (LEU1308) (GLY1358) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |automated matches |Oryza sativa [TaxId: 39947]
d1qmga1 : (LEU308) (SER365) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |Class II ketol-acid reductoisomerase |Spinach (Spinacia oleracea) [TaxId: 3562]
d1qmga1 : (PRO462) (VAL494) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |Class II ketol-acid reductoisomerase |Spinach (Spinacia oleracea) [TaxId: 3562]
d1wekb_ : (ASP169) (LEU196) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d3g0za_ : (ALA237) (GLN267) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2gf2a2 : (GLY203) (SER247) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i76a1 : (LYS155) (LYS205) [view usage] : a.100.1.10 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |ProC C-terminal domain-like |Hypothetical protein TM1727 |Thermotoga maritima [TaxId: 2336]
d2aelb_ : (PHE114) (GLN165) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d2oqmb_ : (THR126) (GLY164) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d4kqxb2 : (PHE194) (GLU241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Slackia exigua [TaxId: 649764]
d1m73e_ : (ASN137) (GLY182) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Human (Homo sapiens) [TaxId: 9606]
d4v1ah_ : (GLN123) (THR161) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.2, i.1, a.128, c.56, c.80, d.92, a.211, c.36, c.55, d.3, f.26, a.123, a.25, a.100, b.34, a.138, c.129,
a.23, h.4, a.149, a.28, f.23, a.64, a.76, a.213