Tableau information
Concept source: d1bs2a2 amino acid (a.a.) range (VAL405)(GLN464)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL405) (ARG411) H1
(LEU418) (GLU437) H2
(PRO446) (GLN464) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 94.8° H2
H3 -142.5° 108.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1e8ea_ : (ASN78) (THR118) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c'' |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d2icta_ : (ARG8) (GLY44) [view usage] : a.35.1.3 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |SinR domain-like |Antitoxin HigA |Escherichia coli [TaxId: 562]
d1rp3a1 : (ARG89) (SER161) [view usage] : a.4.13.1 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma3 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d2d2md_ : (SER4) (LEU79) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Oligobrachia mashikoi [TaxId: 55676]
d3ph2b_ : (LYS33) (GLY85) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Phormidium laminosum [TaxId: 32059]
d1j03a_ : (LYS35) (TYR92) [view usage] : d.120.1.2 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Steroid-binding domain |Putative steroid binding protein AT2G24940 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1uwia1 : (GLU83) (ARG140) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Sulfolobus solfataricus [TaxId: 2287]
d3hf4a_ : (SER3) (HIS72) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1qb2a_ : (LYS394) (VAL431) [view usage] : a.36.1.1 |Signal peptide-binding domain |Signal peptide-binding domain |Signal peptide-binding domain |SRP54M |Human (Homo sapiens) [TaxId: 9606]
d1l6ha_ : (ASN4) (GLN32) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |Non-specific lipid-transfer protein homologue (ns-LTP2) |Rice (Oryza sativa) [TaxId: 4530]
d3vx4a_ : (SER617) (MET651) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1uija1 : (SER148) (VAL172) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d3rj3b_ : (GLY16) (ARG67) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg |Human (Homo sapiens) [TaxId: 9606]
d1jr5a_ : (ASN52) (THR88) [view usage] : a.150.1.1 |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Bacteriophage T4 [TaxId: 10665]
d1nx9a2 : (ALA250) (GLY292) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Acetobacter pasteurianus [TaxId: 438]
d1caub_ : (ASN385) (ASN412) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
d2radb_ : (VAL199) (LYS242) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d1pprm1 : (ASN102) (GLN150) [view usage] : a.131.1.1 |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Peridinin-chlorophyll protein |Dinoflagellate (Amphidinium carterae) [TaxId: 2961]
d1xwrc_ : (LYS6) (ARG45) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d4c3za_ : (SER721) (LEU753) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1perl_ : (SER1) (GLY37) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |434 C1 repressor, DNA-binding domain |Bacteriophage 434 [TaxId: 10712]
d2ff7a_ : (SER558) (LEU591) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Haemolysin B ATP-binding protein |Escherichia coli [TaxId: 562]
d1zs4c_ : (ARG7) (TRP47) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d1cc5a_ : (ASP35) (SER85) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c5 |Azotobacter vinelandii [TaxId: 354]
d1pcia_ : (THR15) (LEU73) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Caricain (protease omega) |Papaya (Carica papaya) [TaxId: 3649]
d1bs2a2 : (VAL405) (GLN464) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Arginyl-tRNA synthetase (ArgRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1zpqd_ : (ARG7) (ASP46) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d3tk2a_ : (ILE12) (LEU55) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Chromobacterium violaceum [TaxId: 536]
d1rp3g1 : (ARG89) (ARG153) [view usage] : a.4.13.1 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma3 domain |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d1jj7a_ : (SER594) (LEU628) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Peptide transporter Tap1, C-terminal ABC domain |Human (Homo sapiens) [TaxId: 9606]
d4kt0a_ : (SER663) (GLY751) [view usage] : f.29.1.1 |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |automated matches |Synechocystis sp. [TaxId: 1148]
d1de4c1 : (ASP610) (ALA663) [view usage] : a.48.2.1 |N-cbl like |Transferrin receptor-like dimerisation domain |Transferrin receptor-like dimerisation domain |Transferrin receptor ectodomain, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4b9aa_ : (ASP161) (PHE201) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1vbga1 : (PRO626) (SER662) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Maize (Zea mays) [TaxId: 4577]
d3s48c_ : (SER3) (HIS72) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Human (Homo sapiens) [TaxId: 9606]
d1m0wa1 : (THR289) (SER321) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vkma_ : (HIS225) (LYS283) [view usage] : c.138.1.1 |Indigoidine synthase A-like |Indigoidine synthase A-like |Indigoidine synthase A-like |Hypothetical protein TM1464 |Thermotoga maritima [TaxId: 2336]
d1irud_ : (GLY164) (GLU197) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome alpha subunit (non-catalytic) |Cow (Bos taurus) [TaxId: 9913]
d1s6ia_ : (LEU84) (ASP126) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcium-dependent protein kinase sk5 CLD |Soybean (Glycine max) [TaxId: 3847]
d2e5na_ : (THR8) (GLY40) [view usage] : a.4.5.81 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ELL N2 domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i1ip_ : (GLU117) (GLY154) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2cbza_ : (SER721) (LEU753) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vyoa_ : (ASP88) (GLY119) [view usage] : c.6.2.0 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |automated matches |automated matches |Encephalitozoon cuniculi [TaxId: 284813]
d1v4ua_ : (SER4) (LYS74) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Bluefin tuna (Thunnus thynnus) [TaxId: 8237]
d3vx4d_ : (SER617) (MET651) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.69, c.6, c.26, a.102, d.92, c.37, d.178, d.153, d.3, a.1, a.4, a.39, a.3, c.30, d.120, a.35, a.52, f.29,
a.48, a.150, c.138, c.150, a.36, a.131