Tableau information
Concept source: d1oaoc_ amino acid (a.a.) range (VAL19)(THR46)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL19) (THR31) H1
(THR33) (LEU39) H2
(LEU40) (THR46) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 1.2° H2
H3 7.6° 6.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1cbga_ : (SER409) (GLY437) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Creeping white clover (Trifolium repens) [TaxId: 3899]
d3ahyc_ : (PRO379) (GLY408) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d2hi2a_ : (LEU3) (GLY55) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Neisseria gonorrhoeae [TaxId: 485]
d4avma_ : (ASP166) (SER243) [view usage] : a.238.1.0 |BAR/IMD domain-like |BAR/IMD domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2mlxa3 : (THR249) (LEU278) [view usage] : a.223.1.0 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |automated matches |automated matches |Escherichia coli [TaxId: 1403831]
d1xhxa2 : (THR427) (TYR449) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d2ou1c_ : (VAL7) (THR76) [view usage] : h.6.1.1 |Apolipoprotein A-II |Apolipoprotein A-II |Apolipoprotein A-II |Apolipoprotein A-II |Human (Homo sapiens) [TaxId: 9606]
d2vrzb_ : (SER7) (TRP43) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3sm5b_ : (ARG575) (LYS621) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d2oqmc_ : (THR126) (GLY154) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d3fr8a2 : (LEU308) (GLY342) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |automated matches |Oryza sativa [TaxId: 39947]
d1qoya_ : (GLY-4) (GLU46) [view usage] : h.4.4.1 |Antiparallel coiled-coil |Bacterial hemolysins |Hemolysin E (HlyE, ClyA, SheA) |Hemolysin E (HlyE, ClyA, SheA) |Escherichia coli [TaxId: 562]
d3ahya_ : (LYS380) (GLY408) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d4ds7a_ : (PHE66) (VAL92) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
d1kz7a1 : (GLU625) (ASN664) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Dbl's big sister, Dbs |Mouse (Mus musculus) [TaxId: 10090]
d4ok1a_ : (ASN848) (LYS883) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Androgen receptor |Human (Homo sapiens) [TaxId: 9606]
d3opva_ : (THR213) (ASP236) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Escherichia coli [TaxId: 562]
d1uujb_ : (ASN40) (ALA75) [view usage] : a.221.1.1 |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3ahyb_ : (PRO379) (GLY408) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1c1ga_ : (MET1) (ILE284) [view usage] : h.1.5.1 |Parallel coiled-coil |Tropomyosin |Tropomyosin |Tropomyosin |Pig (Sus scrofa) [TaxId: 9823]
d3fx7a_ : (ALA45) (GLU88) [view usage] : a.25.5.1 |Ferritin-like |HP0062-like |HP0062-like |automated matches |Helicobacter pylori [TaxId: 210]
d3esxa_ : (ALA95) (GLY113) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |automated matches |Anabaena sp. [TaxId: 1168]
d1ar1a_ : (GLY84) (GLY121) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Paracoccus denitrificans [TaxId: 266]
d1oaoc_ : (VAL19) (THR46) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d2j0oa1 : (ASN107) (ILE178) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Invasin IpaD |Shigella flexneri [TaxId: 623]
d2c6fb_ : (ASP417) (GLY452) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1deqn_ : (GLY51) (LYS165) [view usage] : i.9.1.1 |Blood clotting |Blood clotting |Blood clotting |Fibrinogen |Cow (Bos taurus) [TaxId: 9913]
d1kfda1 : (LEU491) (LYS518) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Escherichia coli [TaxId: 562]
d2oi0a_ : (HIS444) (SER464) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1am9d_ : (SER320) (SER394) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |SREBP-1a |Human (Homo sapiens) [TaxId: 9606]
d2oqmd_ : (THR126) (GLY154) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d4as7a_ : (GLY110) (GLY151) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oaod_ : (VAL19) (THR46) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d1zg3a1 : (GLY7) (GLY40) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d2ddfb_ : (HIS444) (SER464) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2azea1 : (ALA199) (GLN246) [view usage] : e.63.1.1 |E2F-DP heterodimerization region |E2F-DP heterodimerization region |DP dimerization segment |Transcription factor DP-1 |Human (Homo sapiens) [TaxId: 9606]
d2qe7d2 : (PRO214) (GLY237) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Bacillus sp. [TaxId: 90973]
d1kpsb_ : (ALA486) (CYS506) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3b5ya2 : (ASN305) (SER324) [view usage] : f.37.1.1 |ABC transporter transmembrane region |ABC transporter transmembrane region |ABC transporter transmembrane region |Multidrug resistance ABC transporter MsbA, N-terminal domain |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, a.118, c.56, d.92, c.23, c.37, c.55, a.123, a.25, f.24, a.100, a.4, a.39, h.3, e.26, a.87, h.4, d.24, a.38,
f.37, i.9, a.238, h.1, a.213, a.250, e.63, h.6, a.223, a.221