Tableau information
Concept source: d4arxb1 amino acid (a.a.) range (PRO124)(GLY183)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO124) (VAL150) H1
(TYR153) (LEU158) H2
(LEU158) (GLY183) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 138.9° H2
H3 -155.9° 59.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fj4a1 : (SER109) (MET138) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d1rxqa_ : (SER20) (THR84) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d1ggqa_ : (ASN136) (SER200) [view usage] : a.24.12.1 |Four-helical up-and-down bundle |Outer surface protein C (OspC) |Outer surface protein C (OspC) |Outer surface protein C (OspC) |Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]
d4fioc_ : (PHE269) (ALA289) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d3fybb_ : (GLN6) (GLY58) [view usage] : a.293.1.0 |SMc04008-like |SMc04008-like |automated matches |automated matches |Alcanivorax borkumensis [TaxId: 393595]
d4fiob_ : (PHE269) (ALA289) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1yyob1 : (GLU102) (GLY146) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d1ntya1 : (ALA1231) (LYS1302) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Triple functional domain protein TRIO |Human (Homo sapiens) [TaxId: 9606]
d1yywa1 : (ASN101) (GLU145) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d2fdra1 : (SER110) (GLY138) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Hypothetical protein Atu0790 |Agrobacterium tumefaciens [TaxId: 358]
d1yz9b1 : (GLU102) (GLY146) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d3ri7a_ : (THR351) (ASP383) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Pseudomonas mendocina [TaxId: 300]
d1yz9a1 : (ASN101) (GLY146) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d3om3c_ : (PRO449) (THR520) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d3ge3a_ : (PRO352) (ASP383) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Pseudomonas mendocina [TaxId: 300]
d1w5ch_ : (PHE280) (TYR312) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1dceb_ : (ALA191) (GLU221) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Rab geranylgeranyltransferase, beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s2xa_ : (ASN23) (THR94) [view usage] : a.47.3.1 |STAT-like |Cag-Z |Cag-Z |Cag-Z |Helicobacter pylori [TaxId: 210]
d4fioa_ : (PRO268) (ALA289) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1dd8a1 : (PRO110) (ALA137) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d3v3zl_ : (ASN170) (THR251) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1w5cd_ : (ASN194) (ALA290) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d2zfod_ : (SER4) (LEU79) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Oligobrachia mashikoi [TaxId: 55676]
d1rxqb_ : (SER20) (THR84) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d2qvba_ : (ILE169) (GLY198) [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1nr1a1 : (GLY399) (ALA447) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d2cw9a1 : (LEU336) (GLY362) [view usage] : d.17.4.13 |Cystatin-like |NTF2-like |TIM44-like |Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4gp4a_ : (SER414) (LEU493) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1jfza_ : (ASN101) (GLU145) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d2bb0a2 : (ARG89) (ALA122) [view usage] : c.1.9.17 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Imidazolonepropionase-like |Imidazolonepropionase |Bacillus subtilis [TaxId: 1423]
d1ieza_ : (THR4) (LEU23) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Escherichia coli [TaxId: 562]
d2ca0a_ : (ASP73) (VAL107) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d1iica2 : (ASP356) (LEU377) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yyka1 : (THR103) (GLY146) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d1prcl_ : (ASN170) (SER251) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodopseudomonas viridis [TaxId: 1079]
d2oqma1 : (MSE1) (LYS62) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d1gw6a3 : (THR279) (THR307) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2ou6a1 : (THR120) (LEU183) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein DR1065 |Deinococcus radiodurans [TaxId: 1299]
d1w5cb_ : (PHE280) (TYR312) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d2r1hb_ : (LEU71) (PHE97) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
d2oqmb_ : (PHE-2) (LYS62) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d2ebfx3 : (ASP1151) (GLY1180) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1h8la2 : (PRO118) (THR171) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase D, catalytic domain |Crested duck (Lophonetta specularioides) [TaxId: 8836]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, a.104, c.2, c.108, c.56, a.102, d.92, c.95, d.3, f.26, i.5, d.108, a.25, d.17, f.24, a.1, f.1, a.87, a.24,
a.149, a.47, a.213, a.293, d.115, d.147