Tableau information
Concept source: d1d1oa_ amino acid (a.a.) range (SER24)(ASP47)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER24) (PHE36) H1
(PHE36) (LYS41) H2
(MET43) (ASP47) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -117.2° H2
H3 139.9° 61.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jbwa1 : (LEU245) (GLU280) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d1ayga_ : (GLN3) (LYS31) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Hydrogenobacter thermophilus [TaxId: 940]
d1mn8d_ : (THR7) (PHE46) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |MMLV matrix protein |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d4it1b1 : (LEU73) (LEU126) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 205922]
d2btwb1 : (THR99) (LYS120) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d1mn8b_ : (THR7) (PHE46) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |MMLV matrix protein |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d4dhib_ : (SER165) (PRO208) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3a6ha_ : (SER152) (HIS178) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |automated matches |Pseudomonas putida [TaxId: 303]
d1aupa2 : (GLY33) (ILE53) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Clostridium symbiosum [TaxId: 1512]
d1ocja_ : (VAL232) (ASP259) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6a [TaxId: 34413]
d3gysc_ : (PRO95) (LEU136) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Cat (Felis catus) [TaxId: 9685]
d1j3ga_ : (ASP127) (VAL178) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d2ewba1 : (PHE160) (SER195) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2jbwb_ : (LEU245) (GLU280) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d3hl0a_ : (GLU269) (GLY299) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2jbwc_ : (LEU245) (LEU279) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d3hl0b_ : (GLU269) (GLY299) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1enia_ : (GLY55) (GLY102) [view usage] : a.18.1.1 |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |Bacteriophage T4 [TaxId: 10665]
d1ak0a_ : (LEU4) (ALA41) [view usage] : a.124.1.2 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |P1 nuclease |P1 nuclease |Fungus (Penicillium citrinum) [TaxId: 5077]
d3a6ja_ : (SER152) (HIS178) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1ogqa_ : (ASN4) (ASP32) [view usage] : c.10.2.8 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Polygalacturonase inhibiting protein PGIP |Polygalacturonase inhibiting protein PGIP |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1zv6a_ : (PRO15) (LEU42) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wixa_ : (GLY36) (SER57) [view usage] : a.40.3.1 |CH domain-like |Hook domain |Hook domain |Hook homolog 1, Hook1 |Mouse (Mus musculus) [TaxId: 10090]
d2oysa_ : (THR186) (TYR229) [view usage] : c.23.5.5 |Flavodoxin-like |Flavoproteins |Hypothetical protein SP1951 |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2ifad_ : (GLN102) (TRP135) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Hypothetical protein Smu.260 |Streptococcus mutans [TaxId: 1309]
d2hjqa1 : (THR58) (LYS101) [view usage] : a.140.3.2 |LEM/SAP HeH motif |Rho N-terminal domain-like |YqbF C-terminal domain-like |Hypothetical protein YqbF |Bacillus subtilis [TaxId: 1423]
d1be3b2 : (ASN354) (ALA404) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 2 |Cow (Bos taurus) [TaxId: 9913]
d1e1ta2 : (MET341) (GLU377) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d2jj7b2 : (ILE147) (THR181) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |automated matches |Bacillus cereus [TaxId: 1396]
d4dj4a_ : (GLU29) (VAL72) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d1z63a1 : (LYS597) (LYS622) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Helicase of the SNF2/Rad54 hamily |Sulfolobus solfataricus [TaxId: 2287]
d1blle2 : (PHE160) (SER195) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2zwya1 : (TYR68) (PHE100) [view usage] : c.1.8.11 |TIM beta/alpha-barrel |(Trans)glycosidases |Putative alpha-L-fucosidase, catalytic domain |automated matches |Thermotoga maritima [TaxId: 2336]
d4jjfa1 : (PRO175) (LEU197) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d1vqza1 : (GLU298) (VAL327) [view usage] : d.224.1.3 |SufE/NifU |SufE/NifU |SP1160 C-terminal domain-like |LplA-like protein SP1160, C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1u3ca1 : (PRO451) (TYR470) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome C-terminal domain |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2hyec2 : (ASP127) (SER184) [view usage] : a.118.17.1 |alpha-alpha superhelix |Cullin repeat-like |Cullin repeat |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d4k8va2 : (LYS395) (GLN433) [view usage] : a.160.1.6 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |cGAMP synthase, cGAS C-terminal domain |cGAMP synthase, cGAS C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2izza2 : (PRO224) (SER270) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vbna_ : (SER252) (PHE274) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d2e77b_ : (ASN1021) (ASN1054) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d1cb7b_ : (GLU11) (ILE42) [view usage] : c.1.19.2 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Glutamate mutase, large subunit |Glutamate mutase, large subunit |Clostridium cochlearium [TaxId: 1494]
d2j6xa_ : (ASN21) (ASN54) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d2j9aa1 : (PHE160) (SER195) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1ovwa_ : (ASN311) (GLY339) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Fungus (Fusarium oxysporum) [TaxId: 5507]
d1enka_ : (GLY55) (GLY102) [view usage] : a.18.1.1 |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |Bacteriophage T4 [TaxId: 10665]
d1sqsa_ : (THR186) (TYR229) [view usage] : c.23.5.5 |Flavodoxin-like |Flavoproteins |Hypothetical protein SP1951 |Hypothetical protein SP1951 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3b55a_ : (GLU178) (MSE213) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d2c81a_ : (ASN348) (GLY372) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d2np5d2 : (ALA146) (GLN189) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator RHA1_ro04179 |Rhodococcus sp. [TaxId: 1831]
d1xqoa_ : (PRO213) (GLY249) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d4jlxa2 : (ARG383) (ASP426) [view usage] : a.160.1.6 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |cGAMP synthase, cGAS C-terminal domain |cGAMP synthase, cGAS C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2c7ta_ : (ASN348) (LEU373) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d3hyba_ : (LEU3) (GLY52) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Anabaena sp. [TaxId: 1167]
d4hgxb_ : (ASP170) (ILE188) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
d1ijxe_ : (SER78) (LEU107) [view usage] : a.141.1.1 |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Secreted Frizzled-related protein 3 (SFRP-3;fzb) |Mouse (Mus musculus) [TaxId: 10090]
d1f2da_ : (ARG263) (ASP310) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d1g0sb_ : (SER172) (TRP208) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.69, c.2, c.6, a.118, c.79, b.29, c.26, c.56, e.22, c.23, c.37, d.104, d.185, d.3, a.96, d.118, a.1,
a.100, d.90, a.39, a.3, c.125, c.58, a.160, d.54, d.113, a.124, a.40, a.99, d.224, a.61, a.280, a.14, a.121, c.150, a.140, a.141,
a.18