Tableau information
Concept source: d4kaca_ amino acid (a.a.) range (ARG157)(VAL189)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG157) (THR165) H1
(VAL168) (ASN177) H2
(ALA178) (VAL189) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -96.1° H2
H3 -149.6° -86.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2qpea_ : (ASN343) (SER400) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d2p5xa_ : (SER156) (LEU185) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qf2a2 : (VAL589) (MET622) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3gg3b_ : (ASP726) (ARG780) [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |P300/CAF histone acetyltransferase bromodomain |Human (Homo sapiens) [TaxId: 9606]
d3mofa2 : (VAL589) (MET622) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2wbib2 : (GLY268) (GLY347) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m57a_ : (LYS378) (PHE420) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d2jvba_ : (PHE207) (LYS242) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1xlse_ : (PHE317) (CYS357) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR1I3 (CAR) |Mouse (Mus musculus) [TaxId: 10090]
d3sf6a2 : (LEU247) (LEU300) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2faha2 : (LYS601) (LYS640) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1seda_ : (ASP2) (GLY37) [view usage] : a.219.1.1 |Hypothetical protein YhaI |Hypothetical protein YhaI |Hypothetical protein YhaI |Hypothetical protein YhaI |Bacillus subtilis [TaxId: 1423]
d1faza_ : (LYS5) (GLU37) [view usage] : a.133.1.3 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Prokaryotic phospholipase A2 |Prokaryotic phospholipase A2 |Streptomyces violaceoruber [TaxId: 1935]
d2gdza1 : (ALA189) (TYR216) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |15-hydroxyprostaglandin dehydrogenase, PGDH |Human (Homo sapiens) [TaxId: 9606]
d2nppb1 : (GLU232) (ASP268) [view usage] : a.118.1.20 |alpha-alpha superhelix |ARM repeat |B56-like |Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma |Human (Homo sapiens) [TaxId: 9606]
d3pf1a_ : (ASP161) (GLY190) [view usage] : f.4.3.4 |Transmembrane beta-barrels |Porins |Outer membrane protein transport protein |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iqoa_ : (VAL62) (HIS87) [view usage] : d.214.1.1 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Hypothetical protein MTH1880 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1e1ta2 : (ASP161) (GLY201) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d4gnoa2 : (LYS582) (GLN621) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4v1ai_ : (PRO91) (LYS113) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2gtqa4 : (ILE784) (GLU811) [view usage] : a.118.1.27 |alpha-alpha superhelix |ARM repeat |Aminopeptidase N (APN) C-terminal-like |Aminopeptidase N (APN) C-terminal domain |Neisseria meningitidis [TaxId: 122586]
d4p8qa4 : (THR813) (THR870) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ij3a_ : (HIS171) (GLY227) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d4gp4a_ : (ASN343) (LEU408) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1crxa1 : (ALA84) (GLY128) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1chwa1 : (THR73) (GLY118) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Chalcone synthase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1g3ua_ : (SER42) (GLY76) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Thymidylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1le4a_ : (ARG25) (GLU79) [view usage] : a.24.1.1 |Four-helical up-and-down bundle |Apolipoprotein |Apolipoprotein |Apolipoprotein E |Human (Homo sapiens), E4 [TaxId: 9606]
d1elwa_ : (PHE88) (ARG118) [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |Hop |Human (Homo sapiens) [TaxId: 9606]
d1ffta_ : (MET396) (TRP439) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome O ubiquinol oxidase, subunit I |Escherichia coli [TaxId: 562]
d1zsxa_ : (GLY239) (ALA273) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nylb1 : (GLU231) (ASP268) [view usage] : a.118.1.20 |alpha-alpha superhelix |ARM repeat |B56-like |Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma |Human (Homo sapiens) [TaxId: 9606]
d4gmma2 : (LYS582) (MET622) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3tk8a_ : (ASN37) (GLY79) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1nzba1 : (VAL85) (GLY128) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d4g70a_ : (PRO358) (GLY410) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d2jsca_ : (LEU11) (GLY62) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4gmza2 : (LYS582) (GLN621) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3swoa2 : (LEU244) (LEU297) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1tdpa_ : (ILE3) (ALA40) [view usage] : a.29.8.1 |Bromodomain-like |Bacteriocin immunity protein-like |Carnobacteriocin B2 immunity protein |Carnobacteriocin B2 immunity protein |Carnobacterium piscicola [TaxId: 2751]
d3ir6c_ : (THR123) (PHE169) [view usage] : f.21.3.1 |Heme-binding four-helical bundle |Respiratory nitrate reductase 1 gamma chain |Respiratory nitrate reductase 1 gamma chain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1rfza_ : (LYS57) (VAL107) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
d3t57a_ : (GLU289) (THR319) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3gg3a_ : (GLN727) (ARG780) [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |P300/CAF histone acetyltransferase bromodomain |Human (Homo sapiens) [TaxId: 9606]
d3uora_ : (ARG342) (VAL366) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d2wbia2 : (PHE269) (GLY347) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, b.81, c.94, a.104, c.2, i.1, a.118, f.4, c.37, d.104, c.95, a.123, c.51, f.21, f.24, a.4, c.91, a.29, d.113,
a.24, a.133, a.60, a.219, a.195, d.214