Tableau information
Concept source: d3g1ka_ amino acid (a.a.) range (VAL170)(ASN197)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL170) (LEU174) H1
(LEU174) (ASN187) H2
(ASP191) (ASN197) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -35.3° H2
H3 -85.1° -81.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (ILE362) (PHE382) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d3e29a_ : (SER2) (GLY23) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
d1lucb_ : (GLY236) (THR258) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d1hm4b_ : (HIS19) (ASP39) [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |Pentalenene synthase |Streptomyces sp., UC5319 [TaxId: 1931]
d2d3qa1 : (ILE362) (PHE382) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Geotrichum candidum [TaxId: 27317]
d3krfd_ : (ASP61) (PHE104) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha x [TaxId: 34256]
d3g1ka_ : (VAL170) (ASN197) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d3u0pa1 : (ASP151) (LYS183) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1a [TaxId: 9606]
d1uwkb_ : (VAL336) (GLY357) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d3sk3a1 : (HIS63) (LEU85) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d4fila_ : (PRO251) (GLY268) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1dewb_ : (ASN229) (TYR257) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA repair endonuclease Hap1 |Human (Homo sapiens) [TaxId: 9606]
d1y6kl_ : (ASP84) (ASN116) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Human (Homo sapiens) [TaxId: 9606]
d3h3xr_ : (ASP246) (ILE283) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d2ik8b1 : (THR148) (LEU180) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling 16, RGS16 |Human (Homo sapiens) [TaxId: 9606]
d3u5ij_ : (GLY50) (GLY77) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2voia_ : (SER0) (ASP58) [view usage] : f.1.4.0 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3taga2 : (TYR868) (PHE901) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2fyta1 : (PHE238) (PRO268) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Protein arginine N-methyltransferase 3, PRMT3 |Human (Homo sapiens) [TaxId: 9606]
d2bhza3 : (GLN490) (GLU523) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Deinococcus radiodurans [TaxId: 1299]
d2wnha_ : (SER236) (LYS275) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1bslb_ : (ASP235) (THR258) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d2a0la1 : (TYR78) (VAL98) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel KVAP |Aeropyrum pernix [TaxId: 56636]
d1ceua_ : (ASN16) (TYR50) [view usage] : j.11.1.1 |VPR protein fragments |VPR protein fragments |VPR protein fragments |VPR protein fragments |Human immunodeficiency virus type 1 [TaxId: 11676]
d2e00a_ : (PHE-3) (TYR33) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d3fgcb_ : (ASP235) (THR258) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |automated matches |Vibrio harveyi [TaxId: 669]
d3gcba_ : (PHE-3) (TYR33) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d3g68b_ : (SER168) (SER207) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1a6ra_ : (ALA-4) (TYR33) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d3qbka_ : (PRO240) (SER275) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 2257]
d3h4ma_ : (LYS177) (LYS198) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3h3xq_ : (ASP246) (ILE283) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1we1a_ : (LEU5) (GLY32) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase-1 (HO-1) |Synechocystis sp. [TaxId: 1143]
d1ubhl_ : (GLN253) (TYR290) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio vulgaris [TaxId: 881]
d1bg3b3 : (GLN466) (LYS510) [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Mammalian type I hexokinase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1be3c3 : (TYR75) (LEU110) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2kbwa_ : (TYR175) (LYS234) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ue8a_ : (ARG153) (SER193) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus tokodaii [TaxId: 111955]
d3mm1a_ : (ILE362) (PHE382) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d1j1na_ : (ASP458) (GLN489) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Alginate-binding periplasmic protein AlgQ2 |Sphingomonas sp. [TaxId: 28214]
d3rnca_ : (TRP317) (TRP343) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d1qqha_ : (THR93) (CYS109) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d1uina_ : (ALA219) (GLY260) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d3no6a_ : (HIS-7) (GLY30) [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d1xk1a1 : (ASP12) (GLY40) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase-1 (HO-1) |Human (Homo sapiens) [TaxId: 9606]
d2dzya_ : (PHE-3) (TYR33) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d1jmug_ : (ARG78) (THR123) [view usage] : d.196.1.1 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Reovirus [TaxId: 10891]
d1f3la_ : (ASP214) (PRO248) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Arginine methyltransferase, HMT1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1pwha_ : (THR195) (PRO240) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1mtza_ : (VAL204) (PRO235) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d2wnib_ : (SER236) (LYS275) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1hc1a1 : (GLU112) (ILE132) [view usage] : a.85.1.1 |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Spiny lobster (Panulirus interruptus) [TaxId: 6735]
d3wjaa1 : (ASP103) (PHE127) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uwlb_ : (VAL336) (GLY357) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d1jaxa_ : (PRO73) (LYS91) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Coenzyme F420H2:NADP+ oxidoreductase (FNO) |Archaeoglobus fulgidus [TaxId: 2234]
d1de8a_ : (ASN229) (TYR257) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA repair endonuclease Hap1 |Human (Homo sapiens) [TaxId: 9606]
d3brjb_ : (ASN47) (LEU67) [view usage] : a.285.1.1 |MtlR-like |MtlR-like |MtlR-like |Mannitol operon repressor MtlR |Vibrio parahaemolyticus [TaxId: 670]
d1v4va_ : (PRO321) (LYS343) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d4a19q_ : (ALA27) (GLY65) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1c7qa_ : (ASN17) (TRP49) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.94, a.104, c.2, d.58, i.1, c.79, a.128, c.92, c.66, c.80, e.18, c.37, c.55, d.151, d.3, c.87, c.60,
a.132, a.25, d.38, d.19, f.21, b.91, f.13, e.51, c.58, f.1, a.91, a.26, a.85, f.14, a.285, j.11, d.196