Tableau information
Concept source: d1u7ka_ amino acid (a.a.) range (SER16)(LEU63)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER16) (ASN27) H1
(ASP33) (GLN49) H2
(THR51) (LEU63) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 156.6° H2
H3 -38.6° 157.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bp9a_ : (SER16) (THR61) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d1z8ua_ : (LEU4) (SER91) [view usage] : a.7.11.1 |Spectrin repeat-like |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Human (Homo sapiens) [TaxId: 9606]
d2aboa1 : (ASP70) (ASN127) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Bcl-2 homolog V-bcl-2 |Murid herpesvirus 4 [TaxId: 33708]
d2y4za_ : (SER17) (LEU62) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |automated matches |Murine leukemia virus [TaxId: 11786]
d3g1ga_ : (GLY151) (GLN195) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d1ecmb_ : (PRO6) (LYS98) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Chorismate mutase domain of P-protein |Escherichia coli [TaxId: 562]
d3mgxb_ : (ALA111) (GLU161) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Amycolatopsis balhimycina [TaxId: 208443]
d4ntwc_ : (LEU2) (ALA104) [view usage] : a.133.1.0 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |automated matches |automated matches |Micrurus tener [TaxId: 1114302]
d1iyxa2 : (ALA75) (GLU126) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase |Enterococcus hirae [TaxId: 1354]
d3ot1a_ : (ALA163) (GLN204) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3bp9b_ : (SER16) (LEU63) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d3k96a2 : (ASP181) (GLY239) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d3hgwd_ : (LEU10) (THR97) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2ao2a_ : (SER70) (SER150) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d1xzya_ : (LYS5) (PHE88) [view usage] : a.7.11.1 |Spectrin repeat-like |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Human (Homo sapiens) [TaxId: 9606]
d3vpoa_ : (MET252) (GLY336) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kzia_ : (ASN3) (ALA56) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |automated matches |Staphylococcus aureus [TaxId: 1280]
d3ovua_ : (LYS5) (SER91) [view usage] : a.7.11.1 |Spectrin repeat-like |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Alpha-hemoglobin stabilizing protein AHSP |Human (Homo sapiens) [TaxId: 9606]
d3e5la_ : (ARG115) (ARG162) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces avermitilis [TaxId: 33903]
d3hqab_ : (GLN3) (SER66) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2jqta_ : (TYR6) (GLY53) [view usage] : a.23.5.0 |Open three-helical up-and-down bundle |Hemolysin expression modulating protein HHA |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1dl5a1 : (ARG2) (GLU42) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Thermotoga maritima [TaxId: 2336]
d4oj7f_ : (THR37) (THR119) [view usage] : a.130.1.0 |Chorismate mutase II |Chorismate mutase II |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1z82a2 : (ASP168) (SER239) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2f6lb_ : (GLU41) (ASN119) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d3jusa_ : (ILE165) (LEU219) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h9dd_ : (GLY9) (ALA100) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Salicylate biosynthesis protein PchB |Pseudomonas aeruginosa [TaxId: 287]
d2x5la_ : (HIS144) (ARG190) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1ybza1 : (THR2) (ARG75) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |mono-domain chorismate mutase |Pyrococcus furiosus [TaxId: 2261]
d4n83g_ : (LEU177) (GLY265) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Streptococcus sanguinis [TaxId: 388919]
d3aaab_ : (GLN4) (SER42) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d3bp9e_ : (SER16) (LEU63) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d1ivha2 : (LEU48) (ARG110) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isovaleryl-coa dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
d3aa7b_ : (SER2) (SER42) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d2d8ea_ : (GLU3) (ARG87) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Chorismate mutase domain of P-protein |Thermus thermophilus [TaxId: 274]
d2d8da1 : (GLU3) (LEU82) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Chorismate mutase domain of P-protein |Thermus thermophilus [TaxId: 274]
d4m1ha_ : (GLY215) (ILE303) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d2ktbb_ : (ASP229) (MET292) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w68a_ : (MET253) (GLY337) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Mouse (Mus musculus) [TaxId: 10090]
d1u7ka_ : (SER16) (LEU63) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |AKV murine leukemia virus [TaxId: 11791]
d3zkka_ : (TRP384) (GLN423) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bifidobacterium animalis [TaxId: 580050]
d2hyec2 : (TRP340) (LYS400) [view usage] : a.118.17.1 |alpha-alpha superhelix |Cullin repeat-like |Cullin repeat |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d1vl6a1 : (ASN314) (GLY374) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Malate oxidoreductase (malic enzyme) |Thermotoga maritima [TaxId: 2336]
d3n39a_ : (THR179) (ASN264) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iznb_ : (GLN4) (SER42) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d1gaba_ : (ILE2) (ALA53) [view usage] : a.8.1.2 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |GA module, an albumin-binding domain |PAB |Peptostreptococcus magnus [TaxId: 1260]
d2g8lb_ : (CYS7) (GLY66) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d2ponb_ : (ALA135) (LEU190) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator Bcl-xL |Human (Homo sapiens) [TaxId: 9606]
d4a17o_ : (THR91) (UNK171) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2ww4a1 : (GLY106) (GLY148) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d2d8db_ : (GLU3) (GLU85) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Chorismate mutase domain of P-protein |Thermus thermophilus [TaxId: 274]
d1o0la_ : (PHE61) (LYS113) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator Bcl-w |Human (Homo sapiens) [TaxId: 9606]
d1oj4a1 : (GLY106) (GLY148) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Escherichia coli [TaxId: 562]
d3vpna_ : (MET252) (GLY336) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g8la1 : (CYS7) (LEU65) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d3lk3b_ : (ASP3) (SER42) [view usage] : e.43.1.2 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz beta-1 subunit |Capz beta-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
d2js1a_ : (PRO8) (GLU70) [view usage] : a.23.7.1 |Open three-helical up-and-down bundle |YvfG-like |YvfG-like |Hypothetical protein YvfG |Bacillus subtilis [TaxId: 1423]
d1uzrc_ : (THR184) (GLY271) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Mycobacterium tuberculosis [TaxId: 1773]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, a.104, c.2, i.1, a.118, c.66, c.23, e.6, d.14, a.25, a.100, e.43, a.29, f.1, a.23, d.54, a.73, a.133, e.50, a.28,
a.8, a.7, a.130, a.50