Tableau information
Concept source: d2m7ka_ amino acid (a.a.) range (SER18)(PHE61)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER18) (ARG30) H1
(ASN34) (ASP46) H2
(ASP54) (PHE61) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 119.2° H2
H3 -55.4° 95.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cpwa1 : (LEU23) (SER57) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Cbl-interacting protein p70, STS1 |Human (Homo sapiens) [TaxId: 9606]
d1m9sa5 : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d3w67b1 : (LEU28) (CYS80) [view usage] : a.5.3.0 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1go3f_ : (GLU66) (TYR106) [view usage] : a.60.8.2 |SAM domain-like |HRDC-like |RNA polymerase II subunit RBP4 (RpoF) |RNA polymerase II subunit RBP4 (RpoF) |Methanococcus jannaschii [TaxId: 2190]
d2crna1 : (GLU14) (HIS48) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Suppressor of T-cell receptor signaling 2 (STS-2) |Human (Homo sapiens) [TaxId: 9606]
d3hoaa_ : (ASN367) (GLN415) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d2jssa1 : (SER97) (ALA148) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H2A |Baker's yeast (Saccharomyces cerevisiae), H2A.1 [TaxId: 4932]
d1hlva2 : (TYR74) (SER131) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |DNA-binding domain of centromere binding protein B (CENP-B) |Human (Homo sapiens) [TaxId: 9606]
d1go3n_ : (GLU66) (ILE107) [view usage] : a.60.8.2 |SAM domain-like |HRDC-like |RNA polymerase II subunit RBP4 (RpoF) |RNA polymerase II subunit RBP4 (RpoF) |Methanococcus jannaschii [TaxId: 2190]
d1t95a1 : (THR94) (LEU159) [view usage] : a.5.8.1 |RuvA C-terminal domain-like |Hypothetical protein AF0491, middle domain |Hypothetical protein AF0491, middle domain |Hypothetical protein AF0491, middle domain |Archaeoglobus fulgidus [TaxId: 2234]
d1xeua1 : (PRO42) (GLY76) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 1639]
d1jvsa3 : (GLY187) (MSE224) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d4a17l_ : (GLY178) (MET197) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1k78i1 : (THR92) (THR141) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Pax-5 |Human (Homo sapiens) [TaxId: 9606]
d3s3qa_ : (CYS100) (GLY157) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3rnme_ : (THR113) (LEU153) [view usage] : a.9.1.0 |Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h6ta2 : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d2omva2 : (PRO43) (VAL78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1otoa_ : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d3qsda_ : (CYS100) (GLY157) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1k78a2 : (THR92) (ARG140) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Pax-5 |Human (Homo sapiens) [TaxId: 9606]
d2kqya_ : (LEU65) (ALA108) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d1a8ha2 : (PRO308) (ASP348) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Methionyl-tRNA synthetase (MetRS) |Thermus thermophilus [TaxId: 274]
d1wiva_ : (ASP29) (ASN67) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin isopeptidase T |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1g8ma2 : (SER281) (PHE316) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1fp6c_ : (THR56) (LEU76) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1otna_ : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d1gbsa_ : (TYR48) (LYS130) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |Lysozyme |Australian black swan (Cygnus atratus) [TaxId: 8868]
d3groa_ : (THR261) (ALA277) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jxla_ : (SER37) (ASP87) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hhib_ : (SER121) (GLY178) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2wqwa1 : (PRO43) (ILE78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d2wbma2 : (THR89) (ILE154) [view usage] : a.5.8.0 |RuvA C-terminal domain-like |Hypothetical protein AF0491, middle domain |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d1yrqj_ : (ASP137) (GLY224) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1m3ga_ : (SER262) (HIS314) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Mapk phosphatase |Human (Homo sapiens), pac-1 [TaxId: 9606]
d2dvpa_ : (THR154) (LEU184) [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |XTP pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
d2bzta_ : (SER8) (GLU64) [view usage] : a.159.5.1 |Another 3-helical bundle |IscX-like |IscX-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1miva1 : (GLY351) (CYS404) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d1d0ba_ : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d1uj8a1 : (ASP18) (ALA76) [view usage] : a.159.5.1 |Another 3-helical bundle |IscX-like |IscX-like |Iron-sulfur cluster assembly protein IscX |Escherichia coli [TaxId: 562]
d2wqua1 : (PRO43) (ILE78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d1pdnc2 : (ILE80) (VAL124) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Paired protein (prd) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1frvb_ : (ASP130) (ALA215) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d2feza1 : (PRO33) (GLY87) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |Probable regulatory protein EmbR |Mycobacterium tuberculosis [TaxId: 1773]
d1dp7p_ : (THR1) (VAL50) [view usage] : a.4.5.20 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |P4 origin-binding domain-like |Class II MHC transcription factor RFX1 |Human (Homo sapiens) [TaxId: 9606]
d3izbq_ : (THR8) (ARG60) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2omta3 : (PRO43) (VAL78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1c1ka_ : (TYR57) (GLN108) [view usage] : a.120.1.1 |gene 59 helicase assembly protein |gene 59 helicase assembly protein |gene 59 helicase assembly protein |gene 59 helicase assembly protein |Bacteriophage T4 [TaxId: 10665]
d2omua3 : (PRO43) (GLN77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1o6va2 : (PRO43) (GLN77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1o6sa2 : (PRO43) (VAL78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d2wqxa1 : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d2d54a2 : (PRO308) (ASP348) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Thermus thermophilus [TaxId: 274]
d1yrqh_ : (ASP137) (GLY224) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d3d6ya1 : (SER7) (GLY63) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |automated matches |Bacillus subtilis [TaxId: 1423]
d1t1ra4 : (GLY187) (MET224) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d2uzxa1 : (PRO43) (SER77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d1sg9a_ : (SER8) (LEU53) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d1otma_ : (PRO43) (ILE78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin B |Listeria monocytogenes [TaxId: 1639]
d2wqud1 : (PRO43) (ILE78) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d1woya2 : (PRO308) (ASP348) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Thermus thermophilus [TaxId: 274]
d1wvva_ : (ASN158) (LEU202) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d2l2ca_ : (LEU73) (ALA117) [view usage] : a.39.2.0 |EF Hand-like |Insect pheromone/odorant-binding proteins |automated matches |automated matches |Culex quinquefasciatus [TaxId: 7176]
d1p4ra2 : (SER280) (PHE315) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d1o6ta2 : (PRO43) (GLN77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1r89a1 : (LYS144) (TRP195) [view usage] : a.160.1.3 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |Archaeal tRNA CCA-adding enzyme substrate-binding domain |tRNA nucleotidyltransferase, second domain |Archaeoglobus fulgidus [TaxId: 2234]
d2omza2 : (PRO43) (GLN77) [view usage] : c.10.2.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Internalin LRR domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1e3db_ : (ASP136) (GLY220) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio desulfuricans [TaxId: 876]
d3hrdd1 : (ARG24) (GLU71) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Eubacterium barkeri [TaxId: 1528]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.10, c.69, i.1, c.26, c.66, d.92, c.45, e.18, c.37, d.2, d.3, d.81, c.97, c.51, a.4, a.39, d.15, a.160, a.60, a.22,
a.6, a.159, a.5, a.173, a.120, a.9