Tableau information
Concept source: d1iqra1 amino acid (a.a.) range (VAL292)(LEU339)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL292) (ALA304) H1
(SER309) (LEU325) H2
(TRP328) (LEU339) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -120.2° H2
H3 46.7° 154.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3e66a1 : (SER2000) (ILE2059) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2c2vc1 : (ASP128) (MET155) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 variant 1 [TaxId: 9606]
d2ajqa1 : (ALA124) (ASP188) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of T7 DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d2d48a_ : (THR6) (GLU60) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ss1a_ : (ASN7) (ALA55) [view usage] : a.8.1.1 |immunoglobulin/albumin-binding domain-like |Bacterial immunoglobulin/albumin-binding domains |Immunoglobulin-binding protein A modules |Immunoglobulin-binding protein A modules |Staphylococcus aureus [TaxId: 1280]
d1k1xa3 : (TYR272) (VAL308) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d2jnpa_ : (PHE196) (TYR246) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
d3rgwl_ : (GLY412) (GLY501) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d3wccc_ : (GLU29) (ASP76) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d1ijxa_ : (LEU52) (VAL109) [view usage] : a.141.1.1 |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Secreted Frizzled-related protein 3 (SFRP-3;fzb) |Mouse (Mus musculus) [TaxId: 10090]
d1q0ha3 : (ASP150) (GLY177) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1ynjc1 : (ALA1045) (ALA1096) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d1z05a2 : (ILE272) (GLY306) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Transcriptional regulator VC2007 |Vibrio cholerae [TaxId: 666]
d1fuia2 : (CYS269) (GLY291) [view usage] : c.85.1.1 |FucI/AraA N-terminal and middle domains |FucI/AraA N-terminal and middle domains |L-fucose isomerase, N-terminal and second domains |L-fucose isomerase, N-terminal and second domains |Escherichia coli [TaxId: 562]
d2dglc_ : (LYS4) (GLY54) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d2ouwa1 : (ASP9) (ALA42) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein Rru_A0301 |Rhodospirillum rubrum [TaxId: 1085]
d1nkpd_ : (MET499) (LEU581) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Myc proto-oncogene protein |Human (Homo sapiens) [TaxId: 9606]
d1oupa_ : (PRO83) (ASN105) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d1xbna_ : (ILE75) (LYS107) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1kyqa2 : (HIS235) (SER269) [view usage] : e.37.1.1 |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1h99a1 : (LEU119) (LEU165) [view usage] : a.142.1.1 |PTS-regulatory domain, PRD |PTS-regulatory domain, PRD |PTS-regulatory domain, PRD |Transcriptional antiterminator LicT |Bacillus subtilis [TaxId: 1423]
d2v0fa1 : (PRO2670) (LEU2704) [view usage] : d.76.2.1 |GYF/BRK domain-like |BRK domain-like |BRK domain-like |Chromodomain-helicase-DNA-binding protein 7, CHD7 |Human (Homo sapiens) [TaxId: 9606]
d2gf4b_ : (LYS3) (GLY75) [view usage] : a.8.10.1 |immunoglobulin/albumin-binding domain-like |Vng1086c-like |Vng1086c-like |Nypothetical protein Vng1086c |Halobacterium salinarium [TaxId: 2242]
d2pend_ : (LYS4) (MET60) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d2r5cb_ : (ARG368) (GLU401) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Kynurenine--oxoglutarate transaminase I |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1u69a_ : (PRO120) (LYS158) [view usage] : d.32.1.7 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |3-demethylubiquinone-9 3-methyltransferase |Hypothetical protein PA2721 |Pseudomonas aeruginosa [TaxId: 287]
d2dgle_ : (LYS4) (TYR51) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d2qeqa2 : (HIS488) (GLY555) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |West nile virus [TaxId: 11078]
d1r4ae_ : (PRO2172) (LEU2220) [view usage] : a.193.1.1 |GRIP domain |GRIP domain |GRIP domain |Golgi autoantigen, golgin-245 |Human (Homo sapiens) [TaxId: 9606]
d1iawa_ : (ASN172) (ARG207) [view usage] : c.52.1.9 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NaeI |Restriction endonuclease NaeI |Nocardia aerocolonigenes [TaxId: 68170]
d1v93a_ : (SER213) (ILE249) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Thermus thermophilus [TaxId: 274]
d1u5ka2 : (PRO81) (HIS125) [view usage] : g.45.1.2 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |RecO C-terminal domain-like |Recombinational repair protein RecO, C-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d2ofkb_ : (ASP10) (ARG53) [view usage] : a.96.1.4 |DNA-glycosylase |DNA-glycosylase |3-Methyladenine DNA glycosylase I (Tag) |3-Methyladenine DNA glycosylase I (Tag) |Salmonella typhi [TaxId: 601]
d3mw6d_ : (TYR35) (ARG74) [view usage] : a.136.1.1 |FinO-like |FinO-like |FinO-like |Hypothetical protein NMB1681 |Neisseria meningitidis [TaxId: 487]
d3apya_ : (SER213) (GLN257) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2cc3b_ : (THR92) (PHE140) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d4ilja_ : (SER2000) (ILE2059) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2py8a1 : (LYS4) (LEU60) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechocystis sp. PCC 6803 [TaxId: 1148]
d3lhrb_ : (THR44) (ASP92) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w3sb2 : (PRO81) (ALA124) [view usage] : g.45.1.2 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |RecO C-terminal domain-like |Recombinational repair protein RecO, C-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d1fz2b_ : (TRP341) (GLY394) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d2cc3a1 : (THR92) (PHE140) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |Type IV secretion system protein VirB8 |Agrobacterium tumefaciens [TaxId: 358]
d3bhma_ : (SER150) (GLY187) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1orqc_ : (SER178) (VAL240) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel KVAP |Aeropyrum pernix [TaxId: 56636]
d1hc1a1 : (ALA51) (ARG109) [view usage] : a.85.1.1 |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Spiny lobster (Panulirus interruptus) [TaxId: 6735]
d2gf4a1 : (LYS3) (ALA88) [view usage] : a.8.10.1 |immunoglobulin/albumin-binding domain-like |Vng1086c-like |Vng1086c-like |Nypothetical protein Vng1086c |Halobacterium salinarium [TaxId: 2242]
d2b8xa_ : (THR6) (GLU60) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nxha_ : (LEU77) (SER126) [view usage] : a.200.1.1 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Hypothetical protein MTH393 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2ouwb_ : (ASP9) (ALA42) [view usage] : a.152.1.4 |AhpD-like |AhpD-like |TTHA0727-like |Hypothetical protein Rru_A0301 |Rhodospirillum rubrum [TaxId: 1085]
d2fi2b_ : (SER79) (ARG124) [view usage] : a.28.3.2 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |SCAN domain |Zinc finger protein 42 |Human (Homo sapiens) [TaxId: 9606]
d1hqmc_ : (ALA1045) (ALA1096) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d2l0pa_ : (LEU41) (GLU91) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1euma_ : (SER82) (SER159) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Non-hem ferritin |Escherichia coli, FtnA [TaxId: 562]
d1i6vc_ : (ALA1045) (ALA1096) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d4ps6a_ : (ARG29) (ALA60) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1qz4a_ : (ASN4) (GLY56) [view usage] : a.198.1.1 |YcfC-like |YcfC-like |YcfC-like |Hypothetical protein YcfC |Escherichia coli [TaxId: 562]
d1hzia_ : (THR6) (ASP62) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-4 (IL-4) |Human (Homo sapiens) [TaxId: 9606]
d2wb2a2 : (GLY436) (GLU456) [view usage] : a.99.1.0 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.2, c.6, a.128, d.92, e.18, c.37, c.55, d.81, a.96, c.85, d.32, d.20, a.25, d.278, d.17, c.52, a.152, a.39,
i.8, a.99, a.26, d.4, a.28, a.8, a.136, a.280, a.38, a.198, a.85, e.37, d.76, d.233, e.29, f.14, a.200, g.45, a.141, a.193,
a.142