Tableau information
Concept source: d3d6nb2 amino acid (a.a.) range (ASN254)(GLY278)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN254) (ILE259) H1
(ASP260) (SER269) H2
(GLN272) (GLY278) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 58.2° H2
H3 111.0° -66.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1mz4a_ : (THR4) (HIS41) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c550 |Thermosynechococcus elongatus [TaxId: 146786]
d1mi6a_ : (ASN5) (GLU49) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d3hp0a_ : (ASN203) (GLU250) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1shza1 : (THR139) (PHE168) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1r8ia_ : (GLU33) (LEU82) [view usage] : a.8.7.1 |immunoglobulin/albumin-binding domain-like |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Escherichia coli [TaxId: 562]
d1w5ct_ : (THR4) (HIS41) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1wsca1 : (ALA8) (LEU46) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein ST0229 |Sulfolobus tokodaii [TaxId: 111955]
d2qmhj_ : (LEU273) (THR311) [view usage] : c.91.1.2 |PEP carboxykinase-like |PEP carboxykinase-like |HPr kinase HprK C-terminal domain |HPr kinase HprK C-terminal domain |Lactobacillus casei [TaxId: 1582]
d1kqya_ : (LYS257) (VAL273) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1i6ka_ : (GLY266) (MSE322) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d1vj5a2 : (THR442) (LEU479) [view usage] : c.69.1.11 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Epoxide hydrolase |Mammalian epoxide hydrolase, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2csba5 : (GLU240) (LEU290) [view usage] : a.267.1.1 |Topoisomerase V catalytic domain-like |Topoisomerase V catalytic domain-like |Topoisomerase V catalytic domain-like |Topoisomerase V, catalytic domain |Methanopyrus kandleri [TaxId: 2320]
d3puia2 : (LEU406) (ARG424) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Rhodococcus sp. [TaxId: 104109]
d2fw2d_ : (ARG218) (LYS256) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Chromodomain protein CDY2A |Human (Homo sapiens) [TaxId: 9606]
d1gbsa_ : (SER17) (TYR48) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |Lysozyme |Australian black swan (Cygnus atratus) [TaxId: 8868]
d1kohd_ : (GLY231) (LEU267) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1qgka_ : (TYR497) (GLN521) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1h97a_ : (HIS39) (GLU80) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Trematode hemoglobin/myoglobin |Paramphistomum epiclitum [TaxId: 54403]
d2oysa_ : (SER95) (LYS117) [view usage] : c.23.5.5 |Flavodoxin-like |Flavoproteins |Hypothetical protein SP1951 |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2qmhh_ : (LEU273) (GLU310) [view usage] : c.91.1.2 |PEP carboxykinase-like |PEP carboxykinase-like |HPr kinase HprK C-terminal domain |HPr kinase HprK C-terminal domain |Lactobacillus casei [TaxId: 1582]
d2i00c2 : (THR34) (SER60) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
d2ihr1_ : (LEU1) (LEU33) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d1dkpa_ : (ASN137) (ASN171) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d1kr0a_ : (LYS257) (VAL273) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1rh1a2 : (ALA386) (GLY412) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin B C-terminal domain |Escherichia coli [TaxId: 562]
d2vglb_ : (PRO81) (ASP97) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin beta subunit N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
d2gtra_ : (ARG219) (GLU260) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mcbb_ : (ILE156) (PRO221) [view usage] : c.116.1.4 |alpha/beta knot |alpha/beta knot |tRNA(m1G37)-methyltransferase TrmD |automated matches |Haemophilus influenzae [TaxId: 71421]
d3tr7a_ : (THR9) (ALA36) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |automated matches |Coxiella burnetii [TaxId: 777]
d2qmhb_ : (LEU273) (ASP312) [view usage] : c.91.1.2 |PEP carboxykinase-like |PEP carboxykinase-like |HPr kinase HprK C-terminal domain |HPr kinase HprK C-terminal domain |Lactobacillus casei [TaxId: 1582]
d2x0sa1 : (ASN792) (LEU816) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1lbqa_ : (ASP65) (GLY99) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jjua2 : (GLN136) (PRO161) [view usage] : a.3.1.7 |Cytochrome c |Cytochrome c |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Paracoccus denitrificans [TaxId: 266]
d3c07a2 : (ASP91) (ASP123) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator SCO4850 |Streptomyces coelicolor [TaxId: 1902]
d1sqsa_ : (SER95) (LYS117) [view usage] : c.23.5.5 |Flavodoxin-like |Flavoproteins |Hypothetical protein SP1951 |Hypothetical protein SP1951 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4kfqb_ : (ARG255) (THR283) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3zoqa_ : (ASP7) (GLN36) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4tuhh_ : (SER0) (PHE105) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator Bcl-xL |Human (Homo sapiens) [TaxId: 9606]
d2i6hb_ : (ALA29) (GLY57) [view usage] : a.118.8.5 |alpha-alpha superhelix |TPR-like |Atu0120-like |Hypothetical protein Atu0120 |Agrobacterium tumefaciens [TaxId: 358]
d1i1ip_ : (THR275) (ARG325) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ff2a_ : (MET93) (TYR115) [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
d1k4wa_ : (MET209) (LYS253) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ROR-beta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2wcwa_ : (GLU111) (GLN129) [view usage] : c.52.1.0 |Restriction endonuclease-like |Restriction endonuclease-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1dxya1 : (SER101) (THR137) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-2-hydroxyisocaproate dehydrogenase |Lactobacillus casei [TaxId: 1582]
d2uv4a_ : (PHE244) (GLY275) [view usage] : d.37.1.0 |CBS-domain pair |CBS-domain pair |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zcba1 : (THR139) (ARG165) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Mouse (Mus musculus) [TaxId: 10090]
d1de5a_ : (TRP392) (ARG426) [view usage] : c.1.15.2 |TIM beta/alpha-barrel |Xylose isomerase-like |L-rhamnose isomerase |L-rhamnose isomerase |Escherichia coli [TaxId: 562]
d2psfa_ : (GLU195) (SER247) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.69, c.94, c.2, i.1, a.118, c.26, c.92, d.92, c.14, c.23, c.18, d.2, b.18, i.5, c.60, a.123, c.78, d.108,
c.116, d.37, c.52, a.1, c.91, a.3, f.1, a.66, e.38, c.70, a.8, a.121, a.267, d.309