Tableau information
Concept source: d3u0za_ amino acid (a.a.) range (ASP444)(ALA468)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP444) (ARG456) H1
(ARG456) (MET462) H2
(MET462) (ALA468) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -63.2° H2
H3 -136.8° -97.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1s1ib_ : (ARG199) (LEU236) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1u81a_ : (ASP96) (ALA119) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF1 [TaxId: 9606]
d4msta_ : (SER57) (PHE78) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d1dgna_ : (GLN4) (GLU33) [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Iceberg |Human (Homo sapiens) [TaxId: 9606]
d2aboa1 : (SER6) (ASP59) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Bcl-2 homolog V-bcl-2 |Murid herpesvirus 4 [TaxId: 33708]
d1h21a_ : (GLN203) (LYS224) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Dimeric di-heme split-soret cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d1wvaa1 : (LEU140) (ILE156) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Human (Homo sapiens) [TaxId: 9606]
d2hmka2 : (ARG350) (SER381) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 69011]
d1kdoa_ : (VAL87) (ALA119) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
d1akza_ : (GLU87) (HIS115) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d3iv7a_ : (LEU263) (GLY286) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d4c52b_ : (SER2) (SER106) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4skne_ : (GLU87) (LYS114) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d2k8fa_ : (SER4) (GLY55) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2mh0b_ : (SER1726) (GLY1777) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tkba_ : (GLU87) (LYS114) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d2zkib_ : (GLY87) (LYS108) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d4txog_ : (CYS45) (LEU66) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bradyrhizobium diazoefficiens [TaxId: 224911]
d3hv1b1 : (ARG239) (TRP269) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus thermophilus [TaxId: 264199]
d2feoa_ : (VAL87) (PHE120) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Escherichia coli [TaxId: 562]
d1ux4a_ : (SER1372) (PHE1399) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Bni1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4flsa1 : (GLU518) (GLY554) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d3r85a_ : (SER4) (LEU112) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wh8a_ : (THR58) (LYS104) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |Homeobox protein Cux-2, CUTL2 |Human (Homo sapiens) [TaxId: 9606]
d1i2aa_ : (ARG81) (HIS102) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus jannaschii [TaxId: 2190]
d1yy7b2 : (GLY179) (GLU206) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d4ixna1 : (ASP131) (ALA152) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein YjiA, N-terminal domain |Escherichia coli [TaxId: 562]
d4mstb_ : (SER57) (PHE78) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d3m7ra_ : (PRO373) (VAL421) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Vitamin D nuclear receptor |Human (Homo sapiens) [TaxId: 9606]
d1s1ga_ : (ASP87) (GLU145) [view usage] : d.42.1.2 |POZ domain |POZ domain |Tetramerization domain of potassium channels |Potassium channel kv4.3 |Human (Homo sapiens) [TaxId: 9606]
d3r85c_ : (ASN5) (GLN111) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1suia1 : (SER26) (THR53) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Caffeoyl-CoA O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1g5aa2 : (GLU518) (GLY554) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylosucrase |Neisseria polysaccharea [TaxId: 489]
d2g5cc1 : (SER201) (SER254) [view usage] : a.100.1.12 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |TyrA dimerization domain-like |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d4oqoa_ : (THR656) (PHE686) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Cow (Bos taurus) [TaxId: 9913]
d1n6ba_ : (ALA221) (GLU272) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2c5 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2d6ya2 : (ILE78) (GLY135) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative regulator SCO4008 |Streptomyces coelicolor [TaxId: 1902]
d1y6ia2 : (PHE132) (GLY171) [view usage] : a.261.1.1 |GUN4-like |GUN4-like |GUN4-like |Mg-chelatase cofactor Gun4 |Synechocystis sp. PCC 6803 [TaxId: 1148]
d3ueqa1 : (GLU518) (GLY554) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
d3neaa_ : (VAL146) (TYR179) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d3c6ga1 : (PHE232) (GLY287) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Vitamin D 25-hydroxylase Cyp2R1 |Human (Homo sapiens) [TaxId: 9606]
d2y0ja_ : (TRP446) (PHE467) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hb7a_ : (PRO373) (VAL421) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hmja2 : (ARG350) (SER381) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 306]
d3vscb_ : (THR67) (THR97) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Aeropyrum pernix [TaxId: 272557]
d2bg1a1 : (SER609) (ASN645) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2ctoa_ : (ARG38) (ASP75) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gnwb_ : (ASP164) (GLY192) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus isolate [TaxId: 420174]
d1vlmb_ : (HIS3) (LEU34) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Possible histamine N-methyltransferase TM1293 |Thermotoga maritima [TaxId: 2336]
d3s3ea_ : (HIS55) (ASN74) [view usage] : c.45.1.0 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4kfqa_ : (SER258) (THR283) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3g00b_ : (ARG163) (ASN197) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d4floa1 : (GLU518) (GLY554) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Neisseria polysaccharea [TaxId: 489]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, b.82, c.94, a.104, i.1, c.79, c.56, c.66, c.45, c.42, a.211, e.22, d.129, c.23, c.37, c.18, c.47, d.2,
d.151, a.123, a.100, a.138, a.45, f.1, d.42, a.77, e.24, a.35, a.21, a.121, g.53, a.207, a.261