Tableau information
Concept source: d3ch0a_ amino acid (a.a.) range (ASN81)(SER127)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN81) (MSE85) H1
(TYR87) (ILE93) H2
(LEU115) (SER127) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 118.6° H2
H3 84.3° -64.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1v1fa_ : (SER149) (ASP198) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1be3j_ : (THR4) (TYR59) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d4c9fd_ : (SER275) (ASP293) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1jb0l_ : (SER114) (THR150) [view usage] : f.31.1.1 |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Photosystem I reaction center subunit XI, PsaL |Synechococcus elongatus [TaxId: 32046]
d3h1hw_ : (LEU6) (GLU60) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2axtb1 : (MET60) (ASP125) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II core light harvesting protein PsbB |Thermosynechococcus elongatus [TaxId: 146786]
d1a9na_ : (ASN123) (MET161) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d2gena2 : (SER77) (GLY113) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Probable transcriptional regulator PA1836 |Pseudomonas aeruginosa [TaxId: 287]
d4cj9a_ : (SER18) (GLN47) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d2osaa_ : (ASN414) (PHE459) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nuud_ : (SER257) (ARG307) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4f0zb_ : (LEU53) (GLU88) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcineurin regulatory subunit (B-chain) |Human (Homo sapiens) [TaxId: 9606]
d1ex9a_ : (SER211) (ALA283) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase |Pseudomonas aeruginosa [TaxId: 287]
d3j6vi_ : (ASP72) (LEU111) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d4wsha_ : (SER148) (ALA178) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1hx3a_ : (THR154) (THR179) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d1nfsb_ : (THR154) (THR179) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d2yaya_ : (GLY11) (LEU64) [view usage] : a.204.1.0 |all-alpha NTP pyrophosphatases |all-alpha NTP pyrophosphatases |automated matches |automated matches |Leishmania major [TaxId: 5664]
d4c9fb_ : (SER274) (ASP293) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1xnxa_ : (GLU289) (GLU345) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR1I3 (CAR) |Mouse (Mus musculus) [TaxId: 10090]
d1cdda_ : (ILE57) (ALA79) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Escherichia coli [TaxId: 562]
d1wdaa3 : (LEU513) (GLY558) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2jdqa_ : (TYR468) (LEU499) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qfvc_ : (LYS377) (LYS410) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1bccj_ : (THR6) (ASN61) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Chicken (Gallus gallus) [TaxId: 9031]
d2ania_ : (THR250) (MET318) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d2gdva2 : (PHE43) (ASN79) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Sucrose phosphorylase |Bifidobacterium adolescentis [TaxId: 1680]
d2jiub_ : (ASP974) (THR993) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gpea2 : (ASN357) (GLY388) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Glucose oxidase |Penicillium amagasakiense [TaxId: 63559]
d1i37a_ : (GLN867) (SER888) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Androgen receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cf3a2 : (THR353) (GLY384) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Glucose oxidase |Aspergillus niger [TaxId: 5061]
d3anxb_ : (SER249) (LYS288) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1ezvc2 : (LEU276) (ASP309) [view usage] : f.32.1.1 |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vw4k_ : (PHE203) (PHE229) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1v9pa1 : (ARG434) (ARG504) [view usage] : a.60.2.2 |SAM domain-like |RuvA domain 2-like |NAD+-dependent DNA ligase, domain 3 |NAD+-dependent DNA ligase, domain 3 |Thermus filiformis [TaxId: 276]
d1qm6a1 : (LYS115) (LYS163) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d4jfca_ : (ALA186) (ASN221) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d1hx3b_ : (THR154) (THR179) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d1rqfe_ : (SER8) (THR37) [view usage] : g.41.4.1 |Rubredoxin-like |Casein kinase II beta subunit |Casein kinase II beta subunit |Casein kinase II beta subunit |African clawed frog (Xenopus laevis) [TaxId: 8355]
d4pj0b_ : (MET60) (ASP125) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II core light harvesting protein PsbB |Thermosynechococcus elongatus [TaxId: 146786]
d4ffva2 : (VAL666) (ALA693) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4cjaa_ : (SER18) (GLN47) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d4il6b_ : (VAL62) (ASP125) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
d4as7a_ : (ASP279) (LEU320) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3se6a4 : (LEU921) (ARG961) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j26a_ : (ALA53) (ASN73) [view usage] : d.50.4.1 |dsRBD-like |Peptidyl-tRNA hydrolase domain-like |Peptidyl-tRNA hydrolase domain |Ict1 protein |Mouse (Mus musculus) [TaxId: 10090]
d3poma2 : (LYS720) (SER773) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d1t1ua1 : (GLY66) (ASN98) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3t6ec_ : (SER224) (LEU289) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Rhodopseudomonas viridis [TaxId: 1079]
d4gnib2 : (ASP380) (GLN402) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d1zawa1 : (THR124) (LYS176) [view usage] : d.58.62.1 |Ferredoxin-like |Ribosomal protein L10-like |Ribosomal protein L10-like |Ribosomal protein L10 |Thermotoga maritima [TaxId: 2336]
d1ig6a_ : (GLN56) (LYS98) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |MRF-2 DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d3bz1b_ : (MET60) (ASP125) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II core light harvesting protein PsbB |Thermosynechococcus elongatus [TaxId: 146786]
d1l0nj_ : (THR4) (LYS58) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d3wu2b_ : (MET60) (ASP125) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
d2w40a2 : (GLY313) (LYS337) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, c.1, c.10, c.69, d.58, i.1, a.118, c.66, c.77, c.14, d.144, c.37, c.55, d.169, d.126, a.123, c.43, a.25, a.4, a.39,
c.65, a.138, d.16, a.74, d.113, a.124, a.116, a.60, d.50, g.41, a.204, f.44, f.23, a.121, f.55, f.32, f.31