Tableau information
Concept source: d2p4xa1 amino acid (a.a.) range (ALA192)(ARG238)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA192) (ILE201) H1
(ILE201) (GLY211) H2
(GLU214) (ARG238) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -59.0° H2
H3 145.4° -151.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3kr3d_ : (ARG30) (TYR59) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r9va3 : (HIS466) (THR499) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2evua_ : (SER142) (GLY191) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d2z38a_ : (SER152) (THR175) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
d2azla_ : (THR155) (MET212) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Thermotoga maritima [TaxId: 2336]
d2r6ia1 : (THR214) (LYS261) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d2r91a_ : (SER217) (GLY258) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermoproteus tenax [TaxId: 2271]
d1pjta3 : (MET172) (GLU210) [view usage] : e.37.1.1 |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Siroheme synthase CysG, domains 2 and 3 |Salmonella typhimurium [TaxId: 90371]
d2jrta_ : (SER62) (GLN91) [view usage] : a.4.12.0 |DNA/RNA-binding 3-helical bundle |TrpR-like |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
d2zd2a1 : (ALA1192) (ARG1238) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d2dfsb1 : (PHE12) (GLY40) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Mouse (Mus musculus) [TaxId:10090]
d3swoa1 : (LEU60) (ASP98) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3pv0f2 : (THR427) (ILE503) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalF |Escherichia coli [TaxId: 562]
d2q81a_ : (ASN66) (SER113) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1buoa_ : (SER76) (GLN126) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain |Human (Homo sapiens) [TaxId: 9606]
d3tuia_ : (LEU143) (VAL214) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1oqya3 : (LEU232) (PRO267) [view usage] : a.189.1.1 |XPC-binding domain |XPC-binding domain |XPC-binding domain |XPC-binding domain of Rad23 homolog A (Hhr23a) |Human (Homo sapiens) [TaxId: 9606]
d2p8wt3 : (ASP594) (GLY624) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2z37a_ : (SER152) (THR175) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
d3v4zb1 : (GLY64) (ASP96) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1v3aa_ : (LYS125) (TYR152) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Protein tyrosine phosphatase type IVa |Human (Homo sapiens), pr-3 [TaxId: 9606]
d2r6ib_ : (THR214) (LYS261) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d3dhwa1 : (LEU146) (ASP208) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |D-methionine transport system permease protein MetI |Escherichia coli [TaxId: 562]
d2yzma1 : (GLY83) (MET114) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1zi7b_ : (GLU312) (GLY354) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2r31a_ : (ALA192) (ARG238) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d218la_ : (TRP126) (THR155) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d3eevc_ : (GLU181) (LYS206) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |automated matches |Vibrio cholerae [TaxId: 243277]
d1zhwa_ : (GLU312) (ALA352) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vg7a_ : (THR155) (MET212) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
d1g0da4 : (TYR183) (ARG209) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Red sea bream (Chrysophrys major) [TaxId: 143350]
d1kqfc_ : (ASP82) (ALA104) [view usage] : f.21.1.1 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Formate dehydrogenase N, cytochrome (gamma) subunit |Formate dehydrogenase N, cytochrome (gamma) subunit |Escherichia coli [TaxId: 562]
d1hxta_ : (GLY103) (TYR124) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1p0za_ : (GLN11) (LEU44) [view usage] : d.110.6.1 |Profilin-like |Sensory domain-like |Sensory domain of two-component sensor kinase |Sensor kinase CitA |Klebsiella pneumoniae [TaxId: 573]
d1u5ka2 : (PRO129) (GLN204) [view usage] : g.45.1.2 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |RecO C-terminal domain-like |Recombinational repair protein RecO, C-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d1osva_ : (VAL244) (LEU302) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Bile acid receptor FXR |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4qmaa_ : (ALA13) (VAL47) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Ralstonia eutropha [TaxId: 106590]
d214la_ : (ASP127) (ARG154) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d3o5ta_ : (ASN126) (ILE156) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
d1gwja_ : (LEU192) (ARG217) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Morphinone reductase |Pseudomonas putida [TaxId: 303]
d1n0ua3 : (GLU596) (GLY624) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qsaa1 : (SER377) (LEU407) [view usage] : a.118.5.1 |alpha-alpha superhelix |Bacterial muramidases |Bacterial muramidases |70 KDa soluble lytic transglycosylase (SLT70), superhelical domain |Escherichia coli [TaxId: 562]
d1e4ea1 : (GLY100) (MET131) [view usage] : c.30.1.2 |PreATP-grasp domain |PreATP-grasp domain |D-Alanine ligase N-terminal domain |D-alanine:D-lactate ligase VanA, N-domain |Enterococcus faecium [TaxId: 1352]
d2p4xa1 : (ALA192) (ARG238) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d3byic_ : (PRO368) (LEU398) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w3sb2 : (PRO129) (GLU203) [view usage] : g.45.1.2 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |RecO C-terminal domain-like |Recombinational repair protein RecO, C-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d3ly6a2 : (GLY188) (ARG214) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d2v8za_ : (SER222) (LEU261) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1a59a_ : (PRO93) (THR129) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Antarctic bacterium DS2-3R [TaxId: 56673]
d1l6ta_ : (MET1) (ALA77) [view usage] : f.17.1.1 |Transmembrane helix hairpin |F1F0 ATP synthase subunit C |F1F0 ATP synthase subunit C |F1F0 ATP synthase subunit C |Escherichia coli [TaxId: 562]
d2gu0a1 : (VAL108) (ASN141) [view usage] : d.216.1.0 |Rotavirus NSP2 fragment, N-terminal domain |Rotavirus NSP2 fragment, N-terminal domain |automated matches |automated matches |Rotavirus c [TaxId: 10943]
d1cgme_ : (VAL18) (LEU51) [view usage] : a.24.5.1 |Four-helical up-and-down bundle |TMV-like viral coat proteins |TMV-like viral coat proteins |Cucumber green mottle mosaic virus |Cucumber green mottle mosaic virus, strain watermelon [TaxId: 12235]
d1rfzc_ : (GLY112) (ARG160) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
d1ng7a_ : (SER16) (GLY42) [view usage] : a.178.1.1 |Soluble domain of poliovirus core protein 3a |Soluble domain of poliovirus core protein 3a |Soluble domain of poliovirus core protein 3a |Soluble domain of poliovirus core protein 3a |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d2yzga1 : (GLY83) (MSE114) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1ooaa2 : (PHE148) (LYS203) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2l0pa_ : (SER2) (LEU41) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fcca1 : (SER6) (LEU35) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d1r5la2 : (PRO200) (ILE222) [view usage] : c.13.1.1 |SpoIIaa-like |CRAL/TRIO domain |CRAL/TRIO domain |Alpha-tocopherol transfer protein |Human (Homo sapiens) [TaxId: 9606]
d2r94b_ : (SER217) (GLY258) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermoproteus tenax [TaxId: 2271]
d1rfza_ : (GLY112) (ARG160) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
d3by8a_ : (ASP46) (ASP94) [view usage] : d.110.6.1 |Profilin-like |Sensory domain-like |Sensory domain of two-component sensor kinase |automated matches |Escherichia coli [TaxId: 562]
d2z39b_ : (SER152) (THR175) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, b.81, a.118, a.128, c.45, f.4, a.103, e.6, d.2, d.14, d.3, b.2, c.13, a.123, d.110, f.21, a.4, a.39, c.30,
c.58, f.19, d.42, a.24, a.116, d.338, a.209, f.58, a.69, e.37, a.189, f.17, d.381, a.195, g.45, d.216, g.1, a.178