Tableau information
Concept source: d2ozga1 amino acid (a.a.) range (ASP347)(ILE383)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP347) (SER357) H1
(THR360) (GLY368) H2
(THR373) (ILE383) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 154.7° H2
H3 -49.3° 130.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cyzb_ : (ASP66) (ALA112) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Pheromone-binding protein asp1 |Honeybee (Apis mellifera) [TaxId: 7460]
d2avue1 : (SER5) (LEU47) [view usage] : e.64.1.1 |FlhC-like |FlhC-like |FlhC-like |Flagellar transcriptional activator FlhC |Escherichia coli [TaxId: 562]
d2avue1 : (SER74) (GLY130) [view usage] : e.64.1.1 |FlhC-like |FlhC-like |FlhC-like |Flagellar transcriptional activator FlhC |Escherichia coli [TaxId: 562]
d1rj9b1 : (THR23) (GLY87) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d1ixrb1 : (GLU147) (ARG191) [view usage] : a.5.1.1 |RuvA C-terminal domain-like |DNA helicase RuvA subunit, C-terminal domain |DNA helicase RuvA subunit, C-terminal domain |DNA helicase RuvA subunit, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1px5b1 : (PRO201) (LYS264) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Pig (Sus scrofa) [TaxId: 9823]
d1wvua_ : (THR238) (LEU284) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d3k1eb_ : (LEU73) (ASP118) [view usage] : a.39.2.0 |EF Hand-like |Insect pheromone/odorant-binding proteins |automated matches |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1rp3a3 : (PRO4) (ASP85) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d1px5a1 : (THR202) (HIS265) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Pig (Sus scrofa) [TaxId: 9823]
d2bnka_ : (CYS70) (LYS121) [view usage] : a.251.1.1 |Phage replication organizer domain |Phage replication organizer domain |Phage replication organizer domain |automated matches |Bacillus phage [TaxId: 10756]
d2j7pd1 : (ASN27) (PRO78) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d1r4wa_ : (THR96) (ALA145) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Mitochondrial class kappa glutathione S-transferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ny5b2 : (THR340) (LEU383) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d2ou3a1 : (LEU97) (PRO155) [view usage] : a.287.1.1 |TerB-like |TerB-like |COG3793-like |Tellurite resistance protein of COG3793 |Nostoc punctiforme pcc 73102 [TaxId: 63737]
d1aiha_ : (VAL281) (ALA319) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase |Bacteriophage HP1 [TaxId: 10690]
d1a5ja1 : (THR11) (HIS52) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |b-Myb DNA binding domain |Chicken (Gallus gallus) [TaxId: 9031]
d2j7pe1 : (ASN27) (GLU77) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d3vpxa2 : (ASP283) (ARG350) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sporosarcina psychrophila [TaxId: 1476]
d3zoba_ : (ALA15) (LYS60) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1jkwa2 : (PRO209) (TYR262) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |Cyclin H (mcs2) |Human (Homo sapiens) [TaxId: 9606]
d1ef4a_ : (VAL13) (VAL52) [view usage] : a.4.11.1 |DNA/RNA-binding 3-helical bundle |RNA polymerase subunit RPB10 |RNA polymerase subunit RPB10 |RNA polymerase subunit RPB10 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3r72a_ : (ASP65) (ASN116) [view usage] : a.39.2.0 |EF Hand-like |Insect pheromone/odorant-binding proteins |automated matches |automated matches |Honeybee (Apis mellifera) [TaxId: 7460]
d1ddta3 : (ILE310) (ARG377) [view usage] : f.1.2.1 |Toxins' membrane translocation domains |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Corynebacterium diphtheriae [TaxId: 1717]
d2iona1 : (ASN325) (HIS360) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Programmed cell death 4, PDCD4 |Mouse (Mus musculus) [TaxId: 10090]
d4c7od1 : (LEU33) (ASP89) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1whca_ : (THR11) (GLU49) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |UBA/UBX 33.3 kDa protein |Mouse (Mus musculus) [TaxId: 10090]
d1zaea_ : (SER69) (LYS122) [view usage] : a.251.1.1 |Phage replication organizer domain |Phage replication organizer domain |Phage replication organizer domain |automated matches |Bacillus phage [TaxId: 10756]
d4c7ob1 : (ASP30) (VAL88) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3hbda_ : (CYS197) (GLY242) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Picea abies [TaxId: 3329]
d2a8tb_ : (LEU169) (HIS208) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1whua_ : (ALA282) (LYS358) [view usage] : a.4.9.1 |DNA/RNA-binding 3-helical bundle |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |Mouse (Mus musculus) [TaxId: 10090]
d2c5ra1 : (ALA69) (LYS121) [view usage] : a.251.1.1 |Phage replication organizer domain |Phage replication organizer domain |Phage replication organizer domain |Early protein gp16.7 |Bacteriophage phi-29 [TaxId: 10756]
d3haka_ : (ARG164) (TYR225) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ozga1 : (ASP347) (ILE383) [view usage] : d.106.1.4 |SCP-like |SCP-like |EF1021 C-terminal domain-like |Putative acetyltransferase Ava4977 |Anabaena variabilis [TaxId: 1172]
d1ixsa_ : (SER143) (LEU190) [view usage] : a.5.1.1 |RuvA C-terminal domain-like |DNA helicase RuvA subunit, C-terminal domain |DNA helicase RuvA subunit, C-terminal domain |DNA helicase RuvA subunit, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1u20b_ : (LEU169) (ARG209) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1u84a_ : (ASP28) (SER83) [view usage] : a.230.1.1 |YugE-like |YugE-like |YugE-like |hypothetical protein YugE |Bacillus stearothermophilus [TaxId: 1422]
d1w36c3 : (LEU875) (CYS934) [view usage] : c.52.1.25 |Restriction endonuclease-like |Restriction endonuclease-like |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Exodeoxyribonuclease V beta chain (RecC), C-terminal domain |Escherichia coli [TaxId: 562]
d2iola1 : (HIS326) (HIS360) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Programmed cell death 4, PDCD4 |Mouse (Mus musculus) [TaxId: 10090]
d4g7hf1 : (PRO167) (ASP253) [view usage] : a.177.1.0 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1du6a_ : (GLN13) (ARG58) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |pbx1 |Mouse (Mus musculus) [TaxId: 10090]
d2cnwf1 : (ASN27) (GLU77) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d1bc9a_ : (THR183) (PRO243) [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |Cytohesin-1/b2-1 |Human (Homo sapiens) [TaxId: 9606]
d2yvxa1 : (LEU90) (GLU130) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d2o4ta1 : (LYS25) (THR74) [view usage] : a.69.4.1 |Left-handed superhelix |BH3980-like |BH3980-like |Uncharacterized protein BH3976 |Bacillus halodurans [TaxId: 86665]
d1ug3b2 : (LEU1439) (SER1476) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d1z6ma1 : (LYS70) (GLY122) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Hypothetical protein EF0770 |Enterococcus faecalis [TaxId: 1351]
d1ug3a2 : (LEU1439) (SER1476) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d2g8la1 : (ILE72) (LEU129) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d1poga_ : (ILE13) (GLU57) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Oct-1 POU Homeodomain |Human (Homo sapiens) [TaxId: 9606]
d1rp3c3 : (ASN3) (ASP85) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma factor sigma-28 (FliA) |Aquifex aeolicus [TaxId: 63363]
d2zy9b1 : (SER89) (GLU130) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d4ig8a2 : (LYS204) (ASN264) [view usage] : a.160.1.2 |PAP/OAS1 substrate-binding domain |PAP/OAS1 substrate-binding domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |2'-5'-oligoadenylate synthetase 1, OAS1, second domain |Human (Homo sapiens) [TaxId: 9606]
d1okkd1 : (ASN27) (LEU76) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal recognition particle receptor, FtsY |Thermus aquaticus [TaxId: 271]
d3i3ya_ : (GLY229) (LEU283) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 272620]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, a.118, c.72, c.37, c.47, d.2, d.106, c.52, a.4, a.39, f.1, a.74, a.160, d.113, a.24, d.6, e.50, a.69, a.177, a.5,
d.163, a.287, e.64, a.251, a.230