Tableau information
Concept source: d4otoa_ amino acid (a.a.) range (LEU517)(ARG550)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU517) (GLN523) H1
(PRO529) (ALA536) H2
(GLY541) (ARG550) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 131.4° H2
H3 35.0° 131.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4e5ga_ : (MET1) (GLY50) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d1bvsa2 : (ALA65) (ALA102) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Mycobacterium leprae [TaxId: 1769]
d2af7h_ : (ARG3) (ARG48) [view usage] : a.152.1.2 |AhpD-like |AhpD-like |CMD-like |Gamma-carboxymuconolactone decarboxylase, CMD |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1x9za_ : (PRO527) (ARG563) [view usage] : d.292.1.1 |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d1s8na_ : (THR144) (THR198) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Probable two-component system transcriptional regulator Rv1626 |Mycobacterium tuberculosis [TaxId: 1773]
d1h3ea1 : (LEU261) (ALA301) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Thermus thermophilus [TaxId: 274]
d2dqnb1 : (ASP297) (GLY334) [view usage] : a.182.1.2 |GatB/YqeY motif |GatB/YqeY motif |GatB/GatE C-terminal domain-like |Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1l7va_ : (PHE255) (LYS323) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |Escherichia coli [TaxId: 562]
d2zd2a1 : (PRO1148) (GLY1188) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d3qsvd_ : (SER12) (ASN64) [view usage] : d.164.1.0 |SMAD MH1 domain |SMAD MH1 domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1s1hd_ : (ALA56) (LEU99) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ny6b_ : (THR340) (VAL384) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d1ztda1 : (ALA60) (SER123) [view usage] : a.149.1.2 |RNase III domain-like |RNase III domain-like |PF0609-like |Hypothetical protein PF0609 |Pyrococcus furiosus [TaxId: 2261]
d1mhda_ : (ILE11) (GLN58) [view usage] : d.164.1.1 |SMAD MH1 domain |SMAD MH1 domain |SMAD MH1 domain |SMAD MH1 domain |Human (Homo sapiens) [TaxId: 9606]
d2eyqa5 : (ALA941) (GLY989) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d3h0ub_ : (LYS77) (LEU106) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Streptomyces avermitilis [TaxId: 33903]
d1yhda_ : (GLU26) (PHE74) [view usage] : d.279.1.1 |YggX-like |YggX-like |YggX-like |Hypothetical protein YggX |Escherichia coli [TaxId: 562]
d1ny6c_ : (THR340) (VAL384) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d2q0ta1 : (PRO10) (PHE45) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Hypothetical protein Bxeno_B2006 |Burkholderia xenovorans [TaxId: 36873]
d1sxjb1 : (LEU277) (LYS322) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4r9ua_ : (PHE255) (LEU321) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |automated matches |Escherichia coli [TaxId: 83333]
d2b5ma3 : (SER1044) (ILE1100) [view usage] : a.297.1.1 |DDB1 C-terminal-like |DDB1 C-terminal-like |DDB1 C-terminal-like |DDB1 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2qi9a_ : (PHE255) (LYS323) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |Escherichia coli [TaxId: 562]
d2r31a_ : (PRO148) (GLY188) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d1x9zb_ : (PRO527) (ASN564) [view usage] : d.292.1.1 |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d2l3va_ : (PHE48) (SER78) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Brucella melitensis [TaxId: 520466]
d1sd5a_ : (THR144) (THR198) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Probable two-component system transcriptional regulator Rv1626 |Mycobacterium tuberculosis [TaxId: 1773]
d1s20g_ : (THR4) (GLY59) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d2ic8a1 : (SER147) (TYR210) [view usage] : f.51.1.1 |Rhomboid-like |Rhomboid-like |Rhomboid-like |GlpG |Escherichia coli [TaxId: 562]
d1nxub_ : (THR4) (GLY59) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d1t07a_ : (ALA25) (SER75) [view usage] : d.279.1.1 |YggX-like |YggX-like |YggX-like |Hypothetical protein PA5148 |Pseudomonas aeruginosa [TaxId: 287]
d1tf5a2 : (GLU680) (ALA778) [view usage] : a.172.1.1 |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Helical scaffold and wing domains of SecA |Bacillus subtilis [TaxId: 1423]
d2p4xa1 : (ASP147) (GLY188) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d2g8yb_ : (ALA9) (GLY63) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2ikba1 : (ARG69) (GLY102) [view usage] : d.2.1.9 |Lysozyme-like |Lysozyme-like |NMB1012-like |Hypothetical protein NMB1012 |Neisseria meningitidis [TaxId: 487]
d1jjua2 : (ASP93) (PRO131) [view usage] : a.3.1.7 |Cytochrome c |Cytochrome c |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Paracoccus denitrificans [TaxId: 266]
d2ch4a2 : (LYS456) (VAL488) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1w4ja_ : (MET132) (ALA173) [view usage] : a.9.1.0 |Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |automated matches |automated matches |Pyrobaculum aerophilum [TaxId: 13773]
d3cc2m1 : (THR164) (GLY191) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d2b5la3 : (SER1044) (ILE1100) [view usage] : a.297.1.1 |DDB1 C-terminal-like |DDB1 C-terminal-like |DDB1 C-terminal-like |DDB1 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4e5gd_ : (MET1) (GLY50) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d4nfza_ : (GLU2) (SER49) [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
d1j3na1 : (ASP55) (GLY87) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Thermus thermophilus [TaxId: 274]
d2q0tb_ : (PRO10) (PHE45) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Hypothetical protein Bxeno_B2006 |Burkholderia xenovorans [TaxId: 36873]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, i.1, c.26, c.14, d.122, c.23, c.37, d.2, c.95, c.122, c.52, a.152, a.3, f.51, a.149, a.60, a.28, a.80, f.22, d.292,
d.279, d.381, a.182, a.172, d.164, a.9, a.297