Tableau information
Concept source: d1cg5b_ amino acid (a.a.) range (VAL77)(HIS112)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL77) (PHE81) H1
(PHE81) (GLY92) H2
(ASN97) (HIS112) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -42.1° H2
H3 129.6° 114.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hiod_ : (SER47) (GLY94) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |Histone H4 |Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
d6cscb_ : (LYS181) (SER236) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d1euza1 : (PRO339) (LYS376) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermococcus profundus [TaxId: 49899]
d1eo2a_ : (ALA149) (LEU170) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1kfta_ : (ILE29) (ALA53) [view usage] : a.60.2.3 |SAM domain-like |RuvA domain 2-like |Excinuclease UvrC C-terminal domain |Excinuclease UvrC C-terminal domain |Escherichia coli [TaxId: 562]
d1epwa4 : (ASN673) (ILE748) [view usage] : h.4.2.1 |Antiparallel coiled-coil |Clostridium neurotoxins, "coiled-coil" domain |Clostridium neurotoxins, "coiled-coil" domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1h1ob1 : (ASP257) (GLN286) [view usage] : a.3.1.4 |Cytochrome c |Cytochrome c |Two-domain cytochrome c |Cytochrome c4 |Thiobacillus ferrooxidans [TaxId: 920]
d2xzmd_ : (ARG17) (THR61) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4ozfb1 : (THR51) (GLN92) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3loca2 : (MSE126) (PHE175) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Hypothetical transcriptional regulator YcdC |Escherichia coli [TaxId: 562]
d2kyha_ : (SER51) (THR90) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Aeropyrum pernix [TaxId: 56636]
d2acld_ : (ASP241) (TYR304) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Oxysterols receptor LXR-alpha |Mouse (Mus musculus) [TaxId: 10090]
d1o7xb_ : (ASP91) (THR181) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1vjoa_ : (ASN239) (GLY303) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Alanine-glyoxylate aminotransferase |Nostoc sp. PCC 7120 [TaxId: 103690]
d3fr8a2 : (GLU345) (LEU376) [view usage] : a.100.1.2 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) |automated matches |Oryza sativa [TaxId: 39947]
d2zxya_ : (ASP54) (LEU84) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2buxa1 : (ALA149) (THR169) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1t5ja_ : (LYS3) (LYS35) [view usage] : a.209.1.1 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |Hypothetical protein MJ1187 |Methanococcus jannaschii [TaxId: 2190]
d1wuea2 : (HIS1097) (GLY1125) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |N-acylamino acid racemase |Enterococcus faecalis [TaxId: 1351]
d2ewpa_ : (ARG413) (ALA456) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ERR3 |Human (Homo sapiens) [TaxId: 9606]
d3tbfa_ : (TYR253) (ASP284) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d2yj1a_ : (SER4) (GLN111) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2df4a1 : (ILE306) (GLY350) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Glutamyl-tRNA(Gln) amidotransferase subunit A |Staphylococcus aureus [TaxId: 1280]
d1kywc2 : (SER125) (TYR158) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4cbra_ : (SER239) (GLY306) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o7xc_ : (ILE93) (THR181) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1o7xc_ : (GLY220) (VAL238) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1yc2e_ : (THR34) (SER52) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |AF0112, Sir2 homolog (Sir2-AF2) |Archaeoglobus fulgidus [TaxId: 2234]
d1yf2a1 : (ASN137) (SER160) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
d1hlva1 : (PRO39) (CYS65) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |DNA-binding domain of centromere binding protein B (CENP-B) |Human (Homo sapiens) [TaxId: 9606]
d1be3c3 : (SER28) (ASP72) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3srza_ : (MET458) (LYS501) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1f2ha_ : (PRO35) (GLN60) [view usage] : d.58.22.1 |Ferredoxin-like |TRADD, N-terminal domain |TRADD, N-terminal domain |TRADD, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1d1oa_ : (MET43) (SER74) [view usage] : a.39.1.1 |EF Hand-like |EF-hand |Calbindin D9K |Calbindin D9K |Cow (Bos taurus) [TaxId: 9913]
d1h79a_ : (ASN131) (LYS166) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d4jyka2 : (MET127) (ALA177) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Hypothetical transcriptional regulator YcdC |Escherichia coli [TaxId: 562]
d2axte1 : (GLY41) (LYS84) [view usage] : f.23.38.1 |Single transmembrane helix |Cytochrome b559 subunits |Cytochrome b559 subunits |Cytochrome b559 subunit alpha, PsbE |Thermosynechococcus elongatus [TaxId: 146786]
d2rd6a1 : (LYS6) (PRO36) [view usage] : a.41.1.1 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |Human (Homo sapiens) [TaxId: 9606]
d1a59a_ : (PRO131) (TYR183) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Antarctic bacterium DS2-3R [TaxId: 56673]
d1woka1 : (PRO666) (PRO697) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o7xd_ : (ALA92) (THR181) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d6csca_ : (LYS181) (ILE234) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d1ykka_ : (ALA149) (LEU170) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Pseudomonas putida [TaxId: 303]
d1t33a2 : (SER131) (ASP162) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional repressor YbiH |Salmonella typhimurium [TaxId: 90371]
d2xzm8_ : (GLU51) (GLU71) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1bc9a_ : (PHE122) (ARG146) [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |Cytohesin-1/b2-1 |Human (Homo sapiens) [TaxId: 9606]
d3tbfc_ : (MSE254) (ASP284) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d2kbea_ : (SER86) (MET110) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e6vb1 : (GLU235) (GLY281) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanopyrus kandleri [TaxId: 2320]
d1eo9a_ : (ALA149) (LEU170) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1ku7a_ : (SER366) (GLY389) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermus aquaticus [TaxId: 271]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.2, d.58, i.1, a.118, c.68, c.117, c.66, c.80, c.37, c.7, a.103, c.31, a.123, d.19, f.21, a.1, a.100, a.4, a.39,
d.287, a.3, b.3, f.1, d.54, h.4, a.60, a.209, a.22, f.23, a.121, a.89, f.14, a.41