Tableau information
Concept source: d2ebfx1 amino acid (a.a.) range (TYR827)(GLU873)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR827) (GLY840) H1
(GLY843) (PHE848) H2
(THR850) (GLU873) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 88.8° H2
H3 -90.4° -149.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2onya_ : (ALA24) (ASP46) [view usage] : c.66.1.15 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arylamine N-methyltransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mz4a_ : (THR56) (LEU107) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c550 |Thermosynechococcus elongatus [TaxId: 146786]
d2e9fa_ : (PRO14) (GLY74) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2p6ra2 : (ASP575) (HIS625) [view usage] : a.289.1.2 |Sec63 N-terminal domain-like |Sec63 N-terminal domain-like |Achaeal helicase C-terminal domain |Hel308 helicase |Archaeoglobus fulgidus [TaxId: 2234]
d1f82a_ : (GLN274) (TYR327) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1fzia_ : (ASN468) (ARG514) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d4kkfa_ : (GLY399) (VAL441) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Clostridium cellulovorans [TaxId: 1493]
d2i96a_ : (GLU68) (ILE100) [view usage] : d.120.1.1 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ynya2 : (CYS264) (VAL286) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d1pzha2 : (GLU221) (ASP264) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Toxoplasma gondii [TaxId: 5811]
d1tjla1 : (SER13) (GLU109) [view usage] : a.2.14.1 |Long alpha-hairpin |DnaK suppressor protein DksA, alpha-hairpin domain |DnaK suppressor protein DksA, alpha-hairpin domain |DnaK suppressor protein DksA, alpha-hairpin domain |Escherichia coli [TaxId: 562]
d2axtv_ : (THR82) (THR134) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Thermosynechococcus elongatus [TaxId: 32046]
d2axtc1 : (GLN28) (PHE75) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II CP43 protein PsbC |Thermosynechococcus elongatus [TaxId: 146786]
d3s8ga_ : (SER9) (LEU58) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d3mlia_ : (LEU7) (GLU45) [view usage] : a.292.1.1 |HP0242-like |HP0242-like |HP0242-like |Hypothetical protein HP0242 |Helicobacter pylori [TaxId: 210]
d2d45d1 : (GLU75) (ASN121) [view usage] : a.4.5.39 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Penicillinase repressor |Methicillin resistance regulatory protein MecI |Staphylococcus aureus [TaxId: 1280]
d1vqrc_ : (LEU176) (CYS210) [view usage] : a.211.1.3 |HD-domain/PDEase-like |HD-domain/PDEase-like |modified HD domain |Hypothetical protein Cj0248 |Campylobacter jejuni [TaxId: 197]
d1mmod_ : (ASN468) (ASN516) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d2ggfa_ : (ASN416) (CYS447) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4l0ga_ : (GLY413) (LEU444) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d4g7sa_ : (SER9) (LEU58) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1zn3a_ : (GLY256) (LYS305) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d2o2aa1 : (GLU83) (ASP116) [view usage] : d.33.1.2 |SecB-like |SecB-like |SP1558-like |Hypothetical protein gbs1413 |Streptococcus agalactiae [TaxId: 1311]
d1kcxa2 : (ILE279) (ALA300) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |Dihydropyrimidinase related protein-1 |Mouse (Mus musculus) [TaxId: 10090]
d1keua_ : (HIS85) (PHE126) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
d1cb8a1 : (ASP282) (SER328) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Chondroitinase AC |Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
d3wfxb_ : (THR2) (PHE42) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d2g25a2 : (GLN159) (TRP187) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Pyruvate dehydrogenase E1 component, PP module |Escherichia coli [TaxId: 562]
d1v33a_ : (GLU312) (LEU344) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d1f8ia_ : (GLY92) (ALA148) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d2cn1a1 : (PHE39) (ASP87) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |Cytosolic 5'-nucleotidase III |Human (Homo sapiens) [TaxId: 9606]
d1xmea_ : (SER9) (LEU58) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d2jgaa_ : (PHE39) (ASP87) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f61a_ : (SER91) (ALA148) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d1epwa3 : (GLN274) (LYS328) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d3wfxa_ : (THR2) (PHE42) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d1zkla_ : (ASP403) (LEU454) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ebfx1 : (TYR827) (GLU873) [view usage] : a.296.1.1 |PMT central region-like |PMT central region-like |PMT central region-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d2zy9a1 : (GLU23) (LEU51) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d2iwba_ : (ARG452) (MET515) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1cola_ : (ALA77) (VAL107) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin A |Escherichia coli [TaxId: 562]
d1fz2b_ : (ASN468) (LEU515) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1f1ca_ : (PRO56) (ILE107) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Photosystem II associated cytochrome c549 |Arthrospira maxima [TaxId: 129910]
d3mlid_ : (LEU7) (ASP52) [view usage] : a.292.1.1 |HP0242-like |HP0242-like |HP0242-like |Hypothetical protein HP0242 |Helicobacter pylori [TaxId: 210]
d1f5xa_ : (ASN149) (VAL206) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |RhoGEF Vav |Mouse (Mus musculus) [TaxId: 10090]
d2vgla_ : (SER179) (ALA207) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin alpha C subunit N-terminal fragment |Mouse (Mus musculus) [TaxId: 10090]
d4nwia_ : (PHE56) (ASP105) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4kkka_ : (GLY399) (VAL441) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Clostridium cellulovorans [TaxId: 1493]
d1flob1 : (PHE4) (CYS34) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Flp recombinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3sgha_ : (GLN190) (GLY240) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d2lm1a_ : (ARG227) (ASP278) [view usage] : a.4.3.0 |DNA/RNA-binding 3-helical bundle |ARID-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3f31a_ : (THR11) (SER96) [view usage] : a.7.1.0 |Spectrin repeat-like |Spectrin repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j7ah_ : (GLN351) (GLU428) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d3h1hf_ : (ARG11) (LEU50) [view usage] : f.27.1.1 |14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.2, a.118, c.108, a.102, c.66, d.92, a.127, a.211, c.36, a.25, f.24, a.1, a.4, d.162, a.138, a.3, f.1, a.87,
d.120, d.33, a.60, f.27, d.264, a.7, a.289, a.2, a.296, f.55, a.292