Tableau information
Concept source: d4pswa_ amino acid (a.a.) range (GLY277)(SER320)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY277) (GLN283) H1
(SER289) (LYS301) H2
(GLU304) (SER320) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -155.4° H2
H3 -83.6° 109.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4aama2 : (PRO191) (ASP216) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 243231]
d1pi1a_ : (GLU154) (LEU190) [view usage] : a.29.7.1 |Bromodomain-like |Mob1/phocein |Mob1/phocein |Mob1a |Human (Homo sapiens) [TaxId: 9606]
d2vyib_ : (GLU86) (ALA125) [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m5ns_ : (PRO34) (ILE83) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d4keaa_ : (LEU55) (SER76) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d2fo7a1 : (ALA3) (SER34) [view usage] : k.38.1.1 |TPR domain-based design |TPR domain-based design |TPR domain-based design |An 8 repeat consensus TPR superhelix |Synthetic
d1mqva_ : (VAL4) (GLY62) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Rhodopseudomonas palustris [TaxId: 1076]
d2w11b_ : (ILE8) (GLY58) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d3m8ak_ : (MET1) (LYS70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 641809]
d1sh0b_ : (ARG436) (MET485) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Norwalk virus [TaxId: 11983]
d2grnb1 : (VAL434) (GLN459) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4e6sa_ : (ARG4) (LEU61) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1kpsd_ : (LEU436) (ASP464) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2wk4a_ : (ASP435) (VAL497) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Sapporo virus [TaxId: 95342]
d4bkua_ : (PRO96) (ALA121) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Burkholderia pseudomallei [TaxId: 884204]
d2dzna_ : (PRO39) (PRO68) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jroa4 : (THR248) (GLN277) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Xanthine dehydrogenase chain A, domain 3 |Rhodobacter capsulatus [TaxId: 1061]
d1qcna1 : (SER56) (ALA91) [view usage] : b.34.8.1 |SH3-like barrel |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4lera_ : (TYR86) (ALA136) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d1khvb_ : (LYS446) (LYS500) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Rabbit hemorrhagic disease virus [TaxId: 11976]
d4bqfb_ : (PRO741) (ARG802) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2i2tn1 : (THR37) (ALA88) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Escherichia coli [TaxId: 562]
d4aqdb_ : (MET437) (LYS476) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4psxa_ : (GLY277) (LEU316) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2zkoa_ : (ASP2) (LYS70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 11320]
d2z0aa_ : (PRO3) (GLU72) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 11320]
d3deba_ : (TYR267) (LEU304) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1iqpa1 : (ARG235) (LEU283) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C |Pyrococcus furiosus [TaxId: 2261]
d1sh0a_ : (ARG436) (SER488) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Norwalk virus [TaxId: 11983]
d3m8ae_ : (SER3) (GLU72) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 641809]
d1grua_ : (VAL417) (GLY472) [view usage] : i.16.1.1 |GroE chaperon |GroE chaperon |GroE chaperon |GroE chaperon |Escherichia coli [TaxId: 562]
d1tama_ : (SER54) (LYS113) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1iqca2 : (LYS155) (LYS179) [view usage] : a.3.1.5 |Cytochrome c |Cytochrome c |Di-heme cytochrome c peroxidase |Di-heme cytochrome c peroxidase |Nitrosomonas europaea [TaxId: 915]
d1z5sc1 : (VAL434) (THR461) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3o5ca2 : (PRO176) (ASP201) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d2j8wa_ : (PRO5) (GLY66) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Rubrivivax gelatinosus [TaxId: 28068]
d1v33a_ : (SER238) (TYR278) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d2zbta_ : (VAL160) (HIS205) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2io2c1 : (ALA432) (THR461) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2c1ua2 : (SER182) (GLY210) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Paracoccus pantotrophus [TaxId: 82367]
d2b0ca1 : (GLU49) (VAL88) [view usage] : c.108.1.2 |HAD-like |HAD-like |YihX-like |Putative phosphatase YihX |Escherichia coli [TaxId: 562]
d2onga1 : (ASP153) (ASP193) [view usage] : a.102.4.0 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |automated matches |automated matches |Mentha spicata [TaxId: 29719]
d3m8ah_ : (SER3) (GLU71) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 641809]
d3obba1 : (ALA241) (ASP293) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |Hydroxyisobutyrate dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d2dznc_ : (PRO39) (PRO68) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1wg0a_ : (PRO39) (PRO68) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mkfa_ : (ARG28) (CYS66) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d1y4zb1 : (LYS407) (ALA450) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d4nrta_ : (ARG436) (SER488) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Norwalk-like virus [TaxId: 95340]
d4pswa_ : (GLY277) (SER320) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3sdlb_ : (ALA16) (MET91) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza b virus [TaxId: 107412]
d3egwb_ : (LYS407) (ALA450) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d2z0ab_ : (PRO3) (GLU70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 11320]
d4bhxb_ : (SER5) (ILE61) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c7ja_ : (GLU402) (LYS441) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d1r27b_ : (LYS407) (ALA450) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d3m8aa_ : (ASP2) (LYS70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 641809]
d1n00a_ : (ASP88) (ALA132) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin GH1 |Cotton (Gossypium hirsutum) [TaxId: 3635]
d1sxjc1 : (ARG240) (GLU286) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1y7qa1 : (GLU43) (PRO99) [view usage] : a.28.3.2 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |SCAN domain |Zinc finger protein 174 |Human (Homo sapiens) [TaxId: 9606]
d1a52b_ : (ASN455) (LYS531) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d2vhda2 : (SER168) (GLY196) [view usage] : a.3.1.5 |Cytochrome c |Cytochrome c |Di-heme cytochrome c peroxidase |Di-heme cytochrome c peroxidase |Pseudomonas aeruginosa [TaxId: 287]
d1aila_ : (SER3) (LYS70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |N-terminal, RNA-binding domain of nonstructural protein NS1 |Influenza A virus [TaxId: 11320]
d1otka_ : (HIS1) (PHE71) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Phenylacetic acid degradation protein PaaC |Escherichia coli [TaxId: 562]
d1ns1a_ : (SER3) (SER73) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |N-terminal, RNA-binding domain of nonstructural protein NS1 |Influenza A virus [TaxId: 11320]
d1xeqa1 : (THR17) (PHE90) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |N-terminal, RNA-binding domain of nonstructural protein NS1 |Influenza B virus [TaxId: 11520]
d1uuja_ : (SER4) (TYR47) [view usage] : a.221.1.1 |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1orqc_ : (ILE94) (TYR173) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel KVAP |Aeropyrum pernix [TaxId: 56636]
d3m8ac_ : (SER3) (GLU72) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 641809]
d2z0ac_ : (ASN4) (GLU70) [view usage] : a.16.1.1 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |N-terminal, RNA-binding domain of nonstructural protein NS1 |automated matches |Influenza A virus [TaxId: 11320]
d1xqpa_ : (PRO213) (GLY249) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |8-oxoguanine DNA glycosylase, AgoG |Pyrobaculum aerophilum [TaxId: 13773]
d3naha_ : (PRO440) (ARG489) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1ovad_ : (ILE55) (GLN87) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Ovalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d1e6vb1 : (GLY327) (HIS377) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanopyrus kandleri [TaxId: 2320]
d3pw8a_ : (ASN2) (ALA69) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d2l7za_ : (THR15) (LYS68) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gg3a1 : (ASP90) (PHE144) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Erythroid membrane protein 4.1R |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.2, d.58, a.118, c.108, a.102, d.92, a.65, c.87, a.96, a.123, d.108, d.211, a.25, i.16, e.1, k.38, a.100,
b.34, a.4, d.145, a.3, a.29, a.24, a.11, a.28, a.61, d.264, a.80, a.16, a.89, b.116, f.14, d.188, a.221