Tableau information
Concept source: d1v15b_ amino acid (a.a.) range (PRO106)(ILE119)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO106) (GLY110) H1
(GLU112) (ASP115) H2
(ASP115) (ILE119) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 133.0° H2
H3 152.8° -43.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3rnfa_ : (LYS251) (GLY310) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d4fdka_ : (PRO83) (LYS110) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2igse_ : (PRO10) (HIS47) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2b2nb_ : (LEU288) (ALA334) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1ezza2 : (GLN231) (VAL248) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d3bv4a_ : (SER308) (GLY340) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
d6cscb_ : (VAL243) (ASP291) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d3krfd_ : (GLY253) (ALA291) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha x [TaxId: 34256]
d1v15b_ : (PRO106) (ILE119) [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
d2a19a2 : (SER90) (GLY138) [view usage] : a.60.14.0 |SAM domain-like |eIF2alpha middle domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ooda2 : (THR85) (ARG113) [view usage] : c.1.9.9 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |SAH/MTA deaminase-like |Guanine deaminase |Bradyrhizobium japonicum [TaxId: 375]
d1wydb2 : (ARG363) (GLY390) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2xbka_ : (ASP317) (LEU337) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces natalensis [TaxId: 68242]
d2nygd_ : (TRP81) (SER97) [view usage] : c.140.1.2 |TTHA0583/YokD-like |TTHA0583/YokD-like |Aminoglycoside 3-N-acetyltransferase-like |Uncharacterized protein YokD |Bacillus subtilis [TaxId: 1423]
d1szhb_ : (THR21) (VAL72) [view usage] : a.226.1.1 |Her-1 |Her-1 |Her-1 |Her-1 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3urra_ : (LYS22) (GLY55) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2x42a1 : (LYS163) (ARG192) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Thermotoga neapolitana [TaxId: 309803]
d2b2na1 : (GLU289) (ASN333) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d4dgia_ : (ASN171) (GLU221) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xfha_ : (GLU227) (VAL274) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Pyrococcus horikoshii [TaxId: 53953]
d2hv6a1 : (GLU72) (PRO125) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA |Human (Homo sapiens) [TaxId: 9606]
d3puzg_ : (SER187) (VAL212) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2kaxa_ : (SER51) (LEU88) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vhna_ : (SER239) (LYS276) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Putative flavin oxidoreducatase TM0096 |Thermotoga maritima [TaxId: 2336]
d2ixma1 : (GLU72) (PRO125) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA |Human (Homo sapiens) [TaxId: 9606]
d2cfob2 : (ASP352) (ILE382) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d2z71c_ : (VAL232) (ASN260) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d2igsa1 : (PRO10) (HIS47) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |Hypothetical protein PA2222 |Pseudomonas aeruginosa [TaxId: 287]
d1gk2a_ : (SER458) (LEU501) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d4bhxa_ : (LYS66) (MET90) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2mbxa_ : (SER40) (SER72) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d1qz9a_ : (GLU54) (GLY68) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Kynureninase |Pseudomonas fluorescens [TaxId: 294]
d2cfoa2 : (ARG353) (ILE382) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d2o5ra2 : (GLU351) (GLU380) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d2r94d_ : (ILE237) (ALA300) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermoproteus tenax [TaxId: 2271]
d3ubmb_ : (LEU406) (ALA436) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
d1wh8a_ : (TYR30) (GLY56) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |Homeobox protein Cux-2, CUTL2 |Human (Homo sapiens) [TaxId: 9606]
d1c7ia_ : (SER323) (PRO348) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d1b8ra_ : (ASP8) (LYS32) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Carp (Cyprinus carpio) [TaxId: 7962]
d2x40a1 : (LYS163) (ARG192) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |automated matches |Thermotoga neapolitana [TaxId: 309803]
d4doha_ : (GLY135) (THR175) [view usage] : a.26.1.0 |4-helical cytokines |4-helical cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x5la_ : (ASP347) (VAL367) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1z3ix2 : (TYR329) (ASP360) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d3iw0a_ : (ASP347) (VAL367) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1bf5a2 : (VAL516) (LYS566) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT-1, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1maba1 : (GLY451) (SER474) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase alpha subunit, domain 3 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4q7ja3 : (ALA187) (SER227) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Escherichia coli [TaxId: 562]
d1qwva_ : (MET16) (ILE52) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]
d1blqa_ : (MET3) (ASP30) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
d3q94a_ : (THR234) (GLY280) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1y2sa_ : (GLN172) (ARG228) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Sheep (Ovis aries) [TaxId: 9940]
d2quya_ : (ALA233) (ASN260) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Bacillus sphaericus [TaxId: 1421]
d1mx1b_ : (GLN2375) (ASP2408) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d2xzmg_ : (PRO138) (ARG200) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3pvaa_ : (ALA233) (ASN260) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
d2ggmb1 : (THR26) (GLY61) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d3fwba_ : (PRO57) (ARG92) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d5tnca_ : (SER38) (GLY69) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Turkey (Meleagris gallopavo) [TaxId: 9103]
d1c7ja_ : (GLN324) (PRO348) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d2vkdc_ : (LEU137) (ASN197) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2zy9a3 : (LEU386) (ALA449) [view usage] : f.57.1.1 |MgtE membrane domain-like |MgtE membrane domain-like |MgtE membrane domain-like |Mg2+ transporter MgtE |Thermus thermophilus [TaxId: 274]
d1m46a_ : (ARG5) (GLY35) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3pmrb_ : (MET507) (HIS551) [view usage] : a.47.4.0 |STAT-like |CAPPD, an extracellular domain of amyloid beta A4 protein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ecma_ : (LEU56) (GLN94) [view usage] : a.130.1.1 |Chorismate mutase II |Chorismate mutase II |Dimeric chorismate mutase |Chorismate mutase domain of P-protein |Escherichia coli [TaxId: 562]
d2iwma_ : (ALA236) (ASN263) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d1xyqa_ : (ASN171) (GLN227) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Pig (Sus scrofa) [TaxId: 9823]
d1jdla_ : (SER50) (PRO75) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c2 |Rhodospirillum centenum [TaxId: 34018]
d2odpa1 : (THR319) (ILE347) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kfxs_ : (ALA876) (ALA900) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain small (regulatory) subunit (domain VI) |Human (Homo sapiens) [TaxId: 9606]
d3n9sa_ : (ILE263) (LEU300) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Helicobacter pylori [TaxId: 290847]
d3l7wa_ : (SER6) (ALA36) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1jlha_ : (SER440) (VAL466) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Human (Homo sapiens) [TaxId: 9606]
d1nsfa_ : (GLY706) (GLU735) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d2azea1 : (SER315) (GLY340) [view usage] : e.63.1.1 |E2F-DP heterodimerization region |E2F-DP heterodimerization region |DP dimerization segment |Transcription factor DP-1 |Human (Homo sapiens) [TaxId: 9606]
d2kb2a_ : (THR105) (ALA137) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 272620]
d2vkda1 : (LEU137) (ASN197) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2r1hb_ : (ASN102) (ARG144) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
d2ebfx3 : (THR1121) (ASN1150) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.123, c.67, c.69, a.104, d.58, i.1, c.68, c.140, a.128, c.80, a.127, c.37, d.104, a.103, d.2, d.153, d.3, b.2, c.62,
c.78, a.25, d.278, a.1, a.4, a.39, a.3, a.26, d.4, d.6, d.112, a.60, a.28, a.35, f.57, a.130, f.58, a.69, a.47, f.49,
a.97, a.268, a.226, d.43, e.63