Tableau information
Concept source: d1pa1a_ amino acid (a.a.) range (GLY720)(ARG754)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY720) (ARG738) H1
(ASP740) (ASP745) H2
(ILE746) (ARG754) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 138.0° H2
H3 124.2° 45.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4mlwa_ : (SER118) (GLY160) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d2du2a_ : (ASN21) (ASN54) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d2ksca_ : (ASP81) (ASN123) [view usage] : a.1.1.1 |Globin-like |Globin-like |Truncated hemoglobin |automated matches |Synechococcus sp. [TaxId: 32049]
d1d8ba_ : (ASN14) (ALA51) [view usage] : a.60.8.1 |SAM domain-like |HRDC-like |HRDC domain from helicases |HRDC domain from RecQ helicase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vmia_ : (ASN73) (THR101) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Ethanolamine utilization protein EutD |Escherichia coli [TaxId: 562]
d2cpra1 : (ASN503) (LEU544) [view usage] : a.60.8.4 |SAM domain-like |HRDC-like |EXOSC10 HRDC domain-like |Exosome component 10, EXOSC10 |Human (Homo sapiens) [TaxId: 9606]
d2vsuc_ : (ARG225) (ASP249) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d1fb1a_ : (GLU61) (THR106) [view usage] : d.96.1.1 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |GTP cyclohydrolase I |GTP cyclohydrolase I |Human (Homo sapiens) [TaxId: 9606]
d1gzda_ : (SER440) (VAL466) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Pig (Sus scrofa) [TaxId: 9823]
d2g7la1 : (SER20) (ASP50) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Putative transcriptional regulator SCO7704 |Streptomyces coelicolor [TaxId: 1902]
d2ngrb_ : (THR411) (LEU447) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |Cdc42GAP |Human (Homo sapiens) [TaxId: 9606]
d1dosa_ : (THR289) (ASN353) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |Fructose-bisphosphate aldolase (FBP aldolase) |Escherichia coli [TaxId: 562]
d2aoqa_ : (THR13) (GLY60) [view usage] : c.52.1.14 |Restriction endonuclease-like |Restriction endonuclease-like |DNA mismatch repair protein MutH from |automated matches |Haemophilus influenzae [TaxId: 727]
d1sb0a_ : (ASP37) (LEU87) [view usage] : a.12.1.1 |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Kix domain of CBP (creb binding protein) |Mouse (Mus musculus) [TaxId: 10090]
d4bkha_ : (LEU162) (SER199) [view usage] : a.135.1.1 |Tetraspanin |Tetraspanin |Tetraspanin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hbja1 : (GLU439) (THR476) [view usage] : a.60.8.4 |SAM domain-like |HRDC-like |EXOSC10 HRDC domain-like |Exosome complex exonuclease RRP6 domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1g33a_ : (SER39) (SER71) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |Parvalbumin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3fixa_ : (LEU13) (ASN60) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d2ax3a1 : (SER454) (LEU488) [view usage] : c.72.1.4 |Ribokinase-like |Ribokinase-like |YjeF C-terminal domain-like |Hypothetical protein TM0922, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2wqga_ : (ASP4) (GLU40) [view usage] : a.140.2.1 |LEM/SAP HeH motif |SAP domain |SAP domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3k9ua_ : (LEU13) (GLN58) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d2hz2a_ : (GLY81) (ASN123) [view usage] : a.1.1.1 |Globin-like |Globin-like |Truncated hemoglobin |Protozoan/bacterial hemoglobin |Synechocystis sp. PCC 6803 [TaxId: 1148]
d4c7ga2 : (PHE445) (GLY482) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2nr7a1 : (SER84) (ALA129) [view usage] : d.2.1.9 |Lysozyme-like |Lysozyme-like |NMB1012-like |Putative secretion activator PG0293 |Porphyromonas gingivalis [TaxId: 837]
d3dlta_ : (LEU127) (ALA166) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 486408]
d4c7da2 : (PHE445) (MET481) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2q6za_ : (PRO158) (PRO185) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d3f0aa_ : (SER9) (ASN60) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d1hs6a3 : (THR421) (LEU448) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2bi4a_ : (VAL262) (ASN292) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |automated matches |Escherichia coli [TaxId: 562]
d1gm0a_ : (GLY13) (PHE36) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Silkworm (Bombyx mori) [TaxId: 7091]
d1piia2 : (THR3) (VAL32) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Escherichia coli [TaxId: 562]
d3fncb_ : (ALA13) (ALA56) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Listeria innocua [TaxId: 272626]
d1enwa_ : (ARG23) (ASN65) [view usage] : a.5.4.1 |RuvA C-terminal domain-like |Elongation factor TFIIS domain 2 |Elongation factor TFIIS domain 2 |Elongation factor TFIIS domain 2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1edga_ : (GLY36) (GLY59) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase CelA |Clostridium cellulolyticum [TaxId: 1521]
d2j6xb_ : (ASN21) (ASN54) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d1iunb_ : (SER148) (LEU173) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
d3gzna_ : (ASP342) (ASN393) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d4qpoa_ : (SER9) (MET54) [view usage] : a.55.1.2 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |DNA-binding domain (fragment?) of the TraM protein |automated matches |Escherichia coli [TaxId: 83333]
d2dgza1 : (SER1146) (LYS1189) [view usage] : a.60.8.1 |SAM domain-like |HRDC-like |HRDC domain from helicases |Werner syndrome ATP-dependent helicase, WRN |Human (Homo sapiens) [TaxId: 9606]
d1u5la_ : (GLY174) (SER225) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Red-eared slider turtle (Trachemys scripta) [TaxId: 34903]
d1fnna2 : (LYS194) (THR226) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CDC6, N-domain |Pyrobaculum aerophilum [TaxId: 13773]
d1ndoe2 : (GLU410) (THR444) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d1m03a1 : (PHE457) (GLY494) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-N-acetylhexosaminidase |Streptomyces plicatus [TaxId: 1922]
d1m04a1 : (PHE457) (GLY494) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-N-acetylhexosaminidase |Streptomyces plicatus [TaxId: 1922]
d1hp4a1 : (PHE457) (GLY494) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-N-acetylhexosaminidase |Streptomyces plicatus [TaxId: 1922]
d1dgja1 : (PRO87) (ASP116) [view usage] : a.56.1.1 |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |CO dehydrogenase ISP C-domain like |Aldehyde oxidoreductase, domain 2 |Desulfovibrio desulfuricans [TaxId: 876]
d1yt3a2 : (ARG304) (TRP342) [view usage] : a.60.8.3 |SAM domain-like |HRDC-like |RNase D C-terminal domains |Ribonuclease D |Escherichia coli [TaxId: 562]
d2e1ea1 : (SER1146) (ARG1191) [view usage] : a.60.8.1 |SAM domain-like |HRDC-like |HRDC domain from helicases |Werner syndrome ATP-dependent helicase, WRN |Human (Homo sapiens) [TaxId: 9606]
d2wb2a2 : (GLU456) (TYR476) [view usage] : a.99.1.0 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.80, d.92, c.77, c.14, c.45, e.22, d.129, c.72, c.37, d.2, d.96, d.108, c.111, c.52, a.1, a.4, a.39, a.55,
a.99, a.116, d.6, a.60, a.56, a.5, a.12, a.140, a.135