Tableau information
Concept source: d1rp3a2 amino acid (a.a.) range (GLU187)(ASN234)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU187) (GLU200) H1
(PRO202) (GLU211) H2
(SER213) (ASN234) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 129.2° H2
H3 -93.1° 113.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2exvc_ : (TYR27) (GLN81) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4aama2 : (ASN274) (GLY323) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 243231]
d2it0a1 : (ASP6) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d6paxa2 : (THR77) (GLN133) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Pax-6 |Human (Homo sapiens) [TaxId: 9606]
d2ve8e_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1f9nd1 : (HIS7) (HIS49) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d1idya_ : (GLU149) (ARG191) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1ebfa2 : (SER174) (GLY217) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Homoserine dehydrogenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vfca1 : (VAL452) (ASN500) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |Telomeric repeat binding factor 2, TRF2 |Human (Homo sapiens) [TaxId: 9606]
d1iv6a_ : (TRP385) (LEU432) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |DNA-binding domain of human telomeric protein, hTRF1 |Human (Homo sapiens) [TaxId: 9606]
d3k2zb1 : (THR5) (GLY53) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1bi0a1 : (ASP6) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d2ii6a_ : (THR228) (VAL257) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d1vz0a1 : (SER119) (LEU160) [view usage] : a.4.14.1 |DNA/RNA-binding 3-helical bundle |KorB DNA-binding domain-like |KorB DNA-binding domain-like |Putative partitioning protein ParB/Spo0J |Thermus thermophilus [TaxId: 274]
d2iiqa_ : (THR228) (GLU256) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d1vf9a_ : (VAL452) (ARG496) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |Telomeric repeat binding factor 2, TRF2 |Human (Homo sapiens) [TaxId: 9606]
d2ex0b_ : (THR228) (GLU256) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d1c04c_ : (PRO9) (SER69) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d3c57a_ : (ASP152) (GLY193) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1itya_ : (LEU384) (LEU432) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |DNA-binding domain of human telomeric protein, hTRF1 |Human (Homo sapiens) [TaxId: 9606]
d3q5vb_ : (PRO114) (GLN138) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d1on2a1 : (THR3) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d1c0wa1 : (THR7) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1mbea_ : (THR44) (ASN87) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d4c2mj_ : (TRP18) (HIS53) [view usage] : a.4.11.1 |DNA/RNA-binding 3-helical bundle |RNA polymerase subunit RPB10 |RNA polymerase subunit RPB10 |RNA polymerase subunit RPB10 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2e7wa1 : (GLU3) (GLY45) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d1z05a1 : (ASP10) (HIS57) [view usage] : a.4.5.63 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ROK associated domain |Transcriptional regulator VC2007 N-terminal domain |Vibrio cholerae [TaxId: 666]
d3glxa1 : (THR7) (GLY52) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Corynebacterium diphtheriae [TaxId: 1717]
d2axtv_ : (THR134) (GLY158) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Thermosynechococcus elongatus [TaxId: 32046]
d2hyfc1 : (SER5) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d3bbnr1 : (ASN32) (SER73) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1ku2a1 : (VAL277) (LYS324) [view usage] : a.4.13.1 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma3 domain |Sigma factor SigA |Thermus aquaticus [TaxId: 271]
d3kkkb_ : (CYS92) (SER118) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Plasmodium falciparum [TaxId: 36329]
d2cjja1 : (SER12) (GLU64) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Radialis |Garden snapdragon (Antirrhinum majus) [TaxId: 4151]
d2p5vc1 : (ASP7) (GLY50) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d2l1ea_ : (PRO165) (ASP227) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1igna1 : (THR364) (LEU411) [view usage] : a.4.1.6 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of rap1 |DNA-binding domain of rap1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2d9aa_ : (HIS13) (SER55) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2c83a_ : (THR228) (VAL257) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |automated matches |Pasteurella multocida [TaxId: 747]
d1ussa_ : (THR179) (GLY235) [view usage] : a.4.5.13 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Linker histone H1/H5 |Histone H1 homologue Hho1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2znzc1 : (GLU27) (GLY69) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |Putative transcriptional regulator PH1519 |Pyrococcus horikoshii [TaxId: 53953]
d1ciia2 : (ASN328) (LYS450) [view usage] : h.4.3.1 |Antiparallel coiled-coil |Colicin Ia, N-terminal domain |Colicin Ia, N-terminal domain |Colicin Ia, N-terminal domain |Escherichia coli [TaxId: 562]
d3cpjg1 : (MET176) (GLN208) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2exva_ : (TYR27) (GLN81) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2f5ca1 : (THR3) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d4gkhc_ : (ARG225) (GLU269) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d1s6la1 : (PRO26) (THR61) [view usage] : a.4.5.79 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MerB N-terminal domain-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d1hcra_ : (GLU148) (TYR179) [view usage] : a.4.1.2 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Recombinase DNA-binding domain |HIN recombinase (DNA-binding domain) |Synthetic
d2elka_ : (GLY13) (GLU58) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1gvda_ : (LYS97) (PRO140) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d2ve8d_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1f36a_ : (LEU50) (TYR95) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli [TaxId: 562]
d1gv2a1 : (LYS97) (LEU138) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1u78a2 : (SER62) (ARG102) [view usage] : a.4.1.2 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Recombinase DNA-binding domain |Transposase tc3a1-65 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2ve8b_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4hx8a1 : (MET6) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |automated matches |Bacillus subtilis [TaxId: 224308]
d1b1ba1 : (THR7) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d1mbga_ : (THR96) (ASN139) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1guua_ : (ARG45) (ASN87) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d3brob_ : (THR30) (LEU67) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator OEOE1854 |Oenococcus oeni [TaxId: 1247]
d4embb_ : (TYR95) (SER121) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1uw3a_ : (PRO165) (TYR226) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Sheep (Ovis aries) [TaxId: 9940]
d2yuma_ : (THR12) (LEU62) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bi2a1 : (LEU4) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1iqca2 : (ASN235) (GLY284) [view usage] : a.3.1.5 |Cytochrome c |Cytochrome c |Di-heme cytochrome c peroxidase |Di-heme cytochrome c peroxidase |Nitrosomonas europaea [TaxId: 915]
d1gv5a_ : (LYS97) (PRO140) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d4aiua2 : (LYS381) (SER426) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d3o5ca2 : (ASN256) (THR304) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d2hgca1 : (LEU6) (GLY44) [view usage] : a.4.5.77 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |YjcQ-like |Uncharacterized protein YjcQ |Bacillus subtilis [TaxId: 1423]
d1iz1a1 : (GLU2) (ASP42) [view usage] : a.4.5.37 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LysR-like transcriptional regulators |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d1mbja_ : (THR148) (ARG190) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d3hq6a2 : (ASN274) (GLY323) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1msec1 : (THR96) (HIS137) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d3bbok1 : (PRO145) (MET206) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1rr7a_ : (GLN75) (LYS120) [view usage] : a.4.1.14 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Middle operon regulator, Mor |Middle operon regulator, Mor |Bacteriophage Mu [TaxId: 10677]
d3osfa2 : (ALA105) (GLY149) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Trichomonas vaginalis [TaxId: 5722]
d1irza_ : (THR11) (LYS61) [view usage] : a.4.1.11 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |GARP response regulators |Arr10-B |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1w0ua_ : (VAL452) (LEU497) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |Telomeric repeat binding factor 2, TRF2 |Human (Homo sapiens) [TaxId: 9606]
d2qqaa1 : (THR7) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1zq3p1 : (SER11) (HIS64) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Homeotic bicoid protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3bwka_ : (SER50) (GLY91) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2ewna1 : (ASN4) (GLY47) [view usage] : a.4.5.1 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Biotin repressor-like |Biotin repressor, N-terminal domain |Escherichia coli [TaxId: 562]
d1wgxa_ : (ASN12) (ASN56) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Hypothetical protein C14orf106 (KIAA1903) |Human (Homo sapiens) [TaxId: 9606]
d2ev6a1 : (SER5) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d4gkil_ : (ARG225) (GLU269) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d2gtha2 : (SER235) (GLY266) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
d1umqa_ : (SER37) (SER79) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain |Rhodobacter sphaeroides [TaxId: 1063]
d1ba5a_ : (TRP8) (LEU53) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |DNA-binding domain of human telomeric protein, hTRF1 |Human (Homo sapiens) [TaxId: 9606]
d2cg4a1 : (ASN8) (GLY50) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |Regulatory protein AsnC |Escherichia coli [TaxId: 562]
d2e1ca1 : (GLU27) (GLY69) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |Putative transcriptional regulator PH1519 |Pyrococcus horikoshii [TaxId: 53953]
d1f9nc1 : (LYS3) (HIS49) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d1i1ga1 : (ASP3) (GLY46) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |LprA |Pyrococcus furiosus [TaxId: 2261]
d2ozka2 : (SER207) (TYR237) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |SARS coronavirus [TaxId: 227859]
d2b3ta_ : (GLU2) (LEU40) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Escherichia coli [TaxId: 562]
d2ve8f_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3s44a_ : (THR228) (GLU256) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |automated matches |Pasteurella multocida [TaxId: 747]
d1oyia_ : (ALA16) (ALA58) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |dsRNA-binding protein E3 (E3L) |Vaccinia virus [TaxId: 10245]
d1tqba_ : (PRO168) (TYR228) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Sheep (Ovis aries) [TaxId: 9940]
d3iv5b_ : (GLU59) (TYR95) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli K-12 [TaxId: 83333]
d2efna1 : (GLU3) (GLY45) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1a9xa1 : (ASP487) (ASP521) [view usage] : a.92.1.1 |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Escherichia coli [TaxId: 562]
d4iv5a1 : (VAL7) (GLY43) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d1u35c1 : (SER816) (ALA847) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |macro-H2A.1, histone domain |Human (Homo sapiens) [TaxId: 9606]
d1b9ga_ : (GLY7) (ALA49) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin-like growth factor |Human (Homo sapiens) [TaxId: 9606]
d2cu7a1 : (THR13) (LYS59) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |MYSM1 (KIAA1915) |Human (Homo sapiens) [TaxId: 9606]
d2choa2 : (HIS376) (SER426) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Glucosaminidase GH84, catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d2f5fb1 : (THR3) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d2ve8a_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2xokd3 : (GLU366) (GLN416) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1x2la1 : (ASP18) (ALA57) [view usage] : a.35.1.7 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |CUT domain |Homeobox protein Cux-2, CUTL2 |Human (Homo sapiens) [TaxId: 9606]
d3vdga1 : (ASP56) (PHE114) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3q46a_ : (PRO114) (GLN138) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d6paxa1 : (ASP20) (ALA59) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Pax-6 |Human (Homo sapiens) [TaxId: 9606]
d1jdbb1 : (ASN484) (ASP520) [view usage] : a.92.1.1 |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Carbamoyl phosphate synthetase, large subunit connection domain |Escherichia coli [TaxId: 562]
d1ug2a_ : (THR37) (ALA87) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |2610100b20rik gene product |Mouse (Mus musculus) [TaxId: 10090]
d1in4a1 : (ASP258) (GLU298) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Holliday junction helicase RuvB |Thermotoga maritima [TaxId: 2336]
d2qqba1 : (THR7) (GLY52) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1pdnc1 : (ASN20) (GLU59) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Paired protein (prd) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2cqqa1 : (THR12) (SER58) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |DnaJ homolog subfamily C member 1 |Human (Homo sapiens) [TaxId: 9606]
d1k78a1 : (ASP35) (GLU74) [view usage] : a.4.1.5 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Paired domain |Pax-5 |Human (Homo sapiens) [TaxId: 9606]
d2ve8h_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2cyya1 : (GLU7) (GLY49) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1a56a_ : (LEU25) (LEU80) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Nitrosomonas europaea [TaxId: 915]
d1ri7a1 : (ASP26) (GLU67) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |Putative transcriptional regulator PH1519 |Pyrococcus horikoshii [TaxId: 53953]
d2ex0a1 : (THR228) (GLU256) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d1msec2 : (GLU149) (ARG190) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1h8ac1 : (THR96) (ASN139) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |v-Myb |Avian myeloblastosis virus [TaxId: 11866]
d1f43a_ : (ALA14) (ARG53) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Mating type protein A1 Homeodomain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1w0ta_ : (TRP385) (LEU430) [view usage] : a.4.1.4 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |DNA-binding domain of telomeric protein |DNA-binding domain of human telomeric protein, hTRF1 |Human (Homo sapiens) [TaxId: 9606]
d1bw6a_ : (THR9) (ASN48) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |DNA-binding domain of centromere binding protein B (CENP-B) |Human (Homo sapiens) [TaxId: 9606]
d1cora_ : (ALA26) (SER80) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c551 |Pseudomonas stutzeri [TaxId: 316]
d1h31a1 : (GLY89) (ARG143) [view usage] : a.3.1.8 |Cytochrome c |Cytochrome c |Di-heme cytochrome c SoxA |Di-heme cytochrome c SoxA |Rhodovulum sulfidophilum [TaxId: 35806]
d2cxfa1 : (ALA162) (LYS204) [view usage] : a.256.1.1 |RUN domain-like |RUN domain-like |RUN domain |Rap2 interacting protein X (RUFY3) |Mouse (Mus musculus) [TaxId: 10090]
d2qa4i1 : (PRO70) (CYS128) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Haloarcula marismortui [TaxId: 2238]
d1wi9a_ : (GLY104) (GLY146) [view usage] : a.4.5.47 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PCI domain (PINT motif) |Hypothetical protein C20orf116 homolog |Mouse (Mus musculus) [TaxId: 10090]
d4f5sa1 : (ASN120) (CYS167) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2ku4a_ : (PRO165) (SER231) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Horse (Equus caballus) [TaxId: 9796]
d1l0oc_ : (SER108) (LEU158) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |SigmaF |Bacillus stearothermophilus [TaxId: 1422]
d2ve8g_ : (TYR750) (GLY790) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2hyfa1 : (SER5) (GLU50) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Manganese transport regulator MntR |Bacillus subtilis [TaxId: 1423]
d1qcnb1 : (GLY552) (SER590) [view usage] : b.34.8.1 |SH3-like barrel |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3dhwc1 : (THR98) (ASP135) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Methionine import ATP-binding protein MetN |Escherichia coli [TaxId: 562]
d2iw5b1 : (THR385) (TYR424) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |REST corepressor 1, CoREST |Human (Homo sapiens) [TaxId: 9606]
d2chna2 : (LYS381) (SER426) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Glucosaminidase GH84, catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d1iw7f1 : (PRO261) (GLN312) [view usage] : a.4.13.1 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma3 domain |Sigma70 |Thermus thermophilus [TaxId: 274]
d2qklb_ : (THR7) (CYS72) [view usage] : a.242.1.1 |Dcp2 domain-like |Dcp2 domain-like |Dcp2 box A domain |mRNA decapping enzyme Dcp2p, N-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, i.1, c.66, d.144, b.40, c.37, d.3, c.87, d.81, c.60, c.78, a.126, b.34, a.4, c.3, a.3, d.54, h.4, d.6, a.35,
a.22, a.69, d.294, a.92, a.256, g.1, a.242