Tableau information
Concept source: d1dlua1 amino acid (a.a.) range (GLY158)(ILE199)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY158) (GLN169) H1
(ASP173) (GLY193) H2
(GLY193) (ILE199) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 117.6° H2
H3 130.8° -75.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1u5wf_ : (ALA142) (GLY175) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d3e95c_ : (LEU117) (LEU148) [view usage] : d.20.1.0 |UBC-like |UBC-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1ynjk1 : (ILE6) (GLU43) [view usage] : a.143.1.1 |RPB6/omega subunit-like |RPB6/omega subunit-like |RNA polymerase omega subunit |RNA polymerase omega subunit |Thermus aquaticus [TaxId: 271]
d3gpba_ : (PRO249) (SER314) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3vonb_ : (ILE103) (LEU134) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), mms2 [TaxId: 9606]
d1u0ea_ : (LEU281) (GLY331) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Mouse (Mus musculus) [TaxId: 10090]
d4koda3 : (ARG349) (ASP364) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kode3 : (ARG349) (ASP364) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mlia_ : (THR46) (LEU93) [view usage] : a.292.1.1 |HP0242-like |HP0242-like |HP0242-like |Hypothetical protein HP0242 |Helicobacter pylori [TaxId: 210]
d3soza_ : (SER218) (LYS244) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |automated matches |Salmonella enterica [TaxId: 99287]
d2aqxa_ : (THR828) (HIS870) [view usage] : d.143.1.3 |SAICAR synthase-like |SAICAR synthase-like |Inositol polyphosphate kinase (IPK) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2ccaa1 : (GLY99) (TRP135) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2ogkb_ : (LYS60) (ILE90) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypothetical protein AF2318 |Archaeoglobus fulgidus [TaxId: 2234]
d1xa6a1 : (PHE429) (PHE466) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |Beta-chimaerin, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4fa8g_ : (THR109) (GLU145) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i60a_ : (SER175) (PHE197) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein IolI |Bacillus subtilis [TaxId: 1423]
d1hqme_ : (GLY5) (GLU43) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d1j74a_ : (ILE103) (LEU134) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), mms2 [TaxId: 9606]
d1el1a_ : (ASN60) (HIS114) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |Lysozyme |Dog (Canis familiaris), milk [TaxId: 9615]
d2a4da1 : (ILE179) (LEU210) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 variant 1 [TaxId: 9606]
d2eqya_ : (TRP152) (GLY188) [view usage] : a.4.3.0 |DNA/RNA-binding 3-helical bundle |ARID-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fqoa_ : (LEU134) (GLY157) [view usage] : d.185.1.2 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |Autoinducer-2 production protein LuxS |Autoinducer-2 production protein LuxS |Bacillus subtilis [TaxId: 1423]
d2c2vi_ : (ILE132) (LEU163) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1we5a4 : (VAL547) (ALA582) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
d1bs2a1 : (THR485) (PRO522) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Arginyl-tRNA synthetase (ArgRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gh6b2 : (LYS720) (ALA772) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d3v93f_ : (GLN345) (HIS393) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d3mlic_ : (THR46) (HIS99) [view usage] : a.292.1.1 |HP0242-like |HP0242-like |HP0242-like |Hypothetical protein HP0242 |Helicobacter pylori [TaxId: 210]
d4j2ba2 : (MET752) (ASN775) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1u5wc_ : (ALA142) (GLY175) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d1b9ha_ : (THR329) (CYS359) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) |Amycolatopsis mediterranei [TaxId: 33910]
d1hhla_ : (ASN59) (HIS114) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |Lysozyme |Guinea fowl (Numida meleagris) [TaxId: 8996]
d1sj2a1 : (GLY99) (TRP135) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Mycobacterium tuberculosis [TaxId: 1773]
d2ogkd_ : (LYS60) (ILE90) [view usage] : d.77.1.2 |RL5-like |RL5-like |SSO1042-like |Hypothetical protein AF2318 |Archaeoglobus fulgidus [TaxId: 2234]
d2d0ea_ : (ARG71) (ARG106) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1k77a_ : (THR179) (ALA201) [view usage] : c.1.15.5 |TIM beta/alpha-barrel |Xylose isomerase-like |Hypothetical protein YgbM (EC1530) |Hypothetical protein YgbM (EC1530) |Escherichia coli [TaxId: 562]
d4q0na_ : (THR624) (THR667) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mwoa_ : (SER78) (LEU105) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4muma1 : (TRP76) (LEU105) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2iuka2 : (THR795) (GLY836) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1jq3a_ : (PRO261) (LEU293) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thermotoga maritima [TaxId: 2336]
d1u5wb_ : (GLY141) (SER174) [view usage] : c.51.4.3 |Anticodon-binding domain-like |ITPase-like |YjjX-like |Hypothetical protein YjjX |Escherichia coli [TaxId: 562]
d1j7da_ : (ILE103) (LEU134) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), mms2 [TaxId: 9606]
d3mlib_ : (THR46) (HIS96) [view usage] : a.292.1.1 |HP0242-like |HP0242-like |HP0242-like |Hypothetical protein HP0242 |Helicobacter pylori [TaxId: 210]
d2gk3a1 : (SER225) (ILE250) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |Putative cytoplasmic protein STM3548 |Salmonella typhimurium [TaxId: 90371]
d3vond_ : (ILE103) (LEU134) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), mms2 [TaxId: 9606]
d1iv1a_ : (ASP38) (GLU71) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Thermus thermophilus [TaxId: 274]
d2wu9b1 : (MET196) (GLU237) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2fxga1 : (GLY103) (TRP139) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
d1h09a2 : (LYS128) (PRO145) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |N-terminal domain of endolysin |Bacteriophage cp-1 [TaxId: 10747]
d1kvxa_ : (ALA1) (LEU64) [view usage] : a.133.1.2 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Vertebrate phospholipase A2 |Phospholipase A2 |Cow (Bos taurus), pancreas [TaxId: 9913]
d2lc5a_ : (ALA33) (ASN63) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d1mv8a1 : (VAL203) (SER254) [view usage] : a.100.1.4 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |UDP-glucose/GDP-mannose dehydrogenase dimerisation domain |GDP-mannose 6-dehydrogenase, middle domain |Pseudomonas aeruginosa [TaxId: 287]
d4ig6a_ : (VAL155) (ARG217) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d1ku7a_ : (THR397) (LEU437) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |Sigma70 (SigA, RpoD) |Thermus aquaticus [TaxId: 271]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, a.119, c.67, a.104, c.108, c.66, c.80, a.93, a.211, c.23, c.37, d.185, d.2, c.95, c.87, d.20, d.143, c.116, c.51,
d.79, a.100, a.4, a.39, a.29, a.74, i.8, a.116, a.133, a.26, a.27, d.77, a.292, a.143