Tableau information
Concept source: d3vefa_ amino acid (a.a.) range (MET191)(THR231)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET191) (THR196) H1
(THR199) (ILE206) H2
(SER225) (THR231) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 109.7° H2
H3 109.4° 1.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4pj0c_ : (LEU88) (ILE134) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d3pvtb_ : (ASP173) (THR207) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d1bvsa2 : (ASP105) (PRO133) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Mycobacterium leprae [TaxId: 1769]
d1sk7a_ : (GLU66) (GLY92) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Pseudomonas aeruginosa [TaxId: 287]
d3d6nb2 : (GLU217) (PHE241) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2au7a_ : (ASP122) (LYS146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
d1okca_ : (GLY252) (ILE293) [view usage] : f.42.1.1 |Mitochondrial carrier |Mitochondrial carrier |Mitochondrial carrier |ADP,ATP carrier protein |Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
d4gu7a_ : (ASP189) (SER230) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d3f3ya_ : (ASP253) (PRO283) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |Hydroxysteroid sulfotransferase sult2a1 |Human (Homo sapiens) [TaxId: 9606]
d1l7va_ : (GLY217) (LEU249) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |Escherichia coli [TaxId: 562]
d4nfta1 : (SER7) (LYS54) [view usage] : a.22.1.0 |Histone-fold |Histone-fold |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ioha_ : (PRO64) (ILE97) [view usage] : c.108.1.3 |HAD-like |HAD-like |Phosphonoacetaldehyde hydrolase-like |automated matches |Bacillus cereus [TaxId: 1396]
d2gjxa1 : (PRO219) (GLY250) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-hexosaminidase A |Human (Homo sapiens) [TaxId: 9606]
d1r4va_ : (GLY28) (GLY75) [view usage] : a.22.1.4 |Histone-fold |Histone-fold |Bacterial histone-fold protein |Hypothetical protein Aq_328 |Aquifex aeolicus [TaxId: 63363]
d3veca_ : (MET191) (THR231) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d4pmua_ : (THR166) (PRO191) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d4lypa_ : (TRP257) (GLN292) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1prga_ : (LYS404) (THR459) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor gamma, PPAR-gamma |Human (Homo sapiens) [TaxId: 9606]
d1avqa_ : (THR2) (ALA42) [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
d2gwhb_ : (ALA267) (LYS290) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fxab_ : (ALA146) (ASP174) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Protease production regulatory protein Hpr |Bacillus subtilis [TaxId: 1423]
d4lyra_ : (TRP257) (GLN292) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2qi9a_ : (ILE219) (LEU249) [view usage] : f.22.1.1 |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |ABC transporter involved in vitamin B12 uptake, BtuC |Escherichia coli [TaxId: 562]
d1oo0a_ : (SER107) (LYS143) [view usage] : d.232.1.1 |Mago nashi protein |Mago nashi protein |Mago nashi protein |Mago nashi protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2i7pa1 : (TYR277) (ASN311) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
d3pvyb_ : (ASP173) (THR207) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d2ddza1 : (GLY153) (LYS185) [view usage] : d.104.1.4 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |PH0223-like |Uncharacterized protein PH0223 |Pyrococcus horikoshii [TaxId: 53953]
d1iqqa_ : (GLY92) (LYS125) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |S3-RNase |Japanese pear (Pyrus pyrifolia) [TaxId: 3767]
d2ijca1 : (LEU107) (GLY141) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d2jj7b2 : (PRO79) (ILE118) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |automated matches |Bacillus cereus [TaxId: 1396]
d4lyqa_ : (TRP257) (GLN292) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2dqnc_ : (THR5) (SER44) [view usage] : a.137.12.1 |Non-globular all-alpha subunits of globular proteins |Glu-tRNAGln amidotransferase C subunit |Glu-tRNAGln amidotransferase C subunit |Glu-tRNAGln amidotransferase C subunit, GatC |Staphylococcus aureus [TaxId: 1280]
d3qeta2 : (SER534) (GLY610) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1qkta_ : (MET421) (PHE461) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d2ouza_ : (MET421) (PHE461) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d2qhfa_ : (ASP117) (GLY160) [view usage] : d.258.1.0 |Chorismate synthase, AroC |Chorismate synthase, AroC |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2h4ta1 : (ASP519) (GLY549) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3poma1 : (PRO515) (ALA538) [view usage] : a.74.1.3 |Cyclin-like |Cyclin-like |Retinoblastoma tumor suppressor domains |Retinoblastoma tumor suppressor domains |Human (Homo sapiens) [TaxId: 9606]
d2i7pc1 : (TYR277) (ASN311) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
d2c3ea_ : (ILE260) (ASP291) [view usage] : f.42.1.1 |Mitochondrial carrier |Mitochondrial carrier |Mitochondrial carrier |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2yeza1 : (GLU48) (TYR84) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3vefa_ : (MET191) (THR231) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d1r5za_ : (THR43) (VAL76) [view usage] : f.40.1.1 |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |V-type ATP synthase subunit C |Thermus thermophilus [TaxId: 274]
d4cayb_ : (SER38) (HIS82) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b7sa3 : (GLU335) (TYR378) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Leukotriene A4 hydrolase catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2nqbh_ : (ALA1435) (LYS1482) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3d3za_ : (GLU123) (GLY160) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d3pvrb_ : (ASP173) (THR207) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d2fbqa2 : (THR85) (VAL133) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator PsrA |Pseudomonas aeruginosa [TaxId: 287]
d2p9pf_ : (ASN120) (PHE168) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d3umca_ : (ARG16) (GLY57) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3vefb_ : (ASP190) (THR231) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d1im9a2 : (GLU49) (ASN86) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Human (Homo sapiens), HLA-CW4 [TaxId: 9606]
d2kwca_ : (THR4) (ARG24) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hyrc2 : (SER132) (GLY175) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC homolog |Human (Homo sapiens), Mic-a [TaxId: 9606]
d1rjdc_ : (SER27) (VAL63) [view usage] : c.66.1.37 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Leucine carboxy methyltransferase Ppm1 |Leucine carboxy methyltransferase Ppm1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.58, c.108, c.66, d.92, b.40, c.37, d.104, c.55, a.132, a.123, c.78, c.43, a.25, d.124, d.19, c.52, a.152, a.4,
d.232, d.15, a.74, a.60, d.198, a.22, f.22, f.42, a.121, d.258, f.40, f.55, a.137