Tableau information
Concept source: d2bl7a1 amino acid (a.a.) range (ASN4)(ASP46)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN4) (LYS20) H1
(SER25) (LYS40) H2
(LYS40) (ASP46) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -156.4° H2
H3 107.3° -88.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ocea_ : (PRO42) (ASP92) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2iw5a1 : (THR230) (GLY260) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d1yozb_ : (SER16) (GLY61) [view usage] : a.253.1.1 |AF0941-like |AF0941-like |AF0941-like |Hypothetical protein AF0941 |Archaeoglobus fulgidus [TaxId: 2234]
d3vqsb_ : (SER84) (LEU127) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1kfta_ : (SER54) (LEU76) [view usage] : a.60.2.3 |SAM domain-like |RuvA domain 2-like |Excinuclease UvrC C-terminal domain |Excinuclease UvrC C-terminal domain |Escherichia coli [TaxId: 562]
d1ryaa_ : (THR131) (THR155) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d1t0qb_ : (SER149) (GLU194) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouE |Pseudomonas stutzeri [TaxId: 316]
d2xhub_ : (ILE85) (LEU127) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d2ykza_ : (PRO5) (ASP75) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d1y76b1 : (GLU87) (SER139) [view usage] : a.194.1.1 |L27 domain |L27 domain |L27 domain |Maguk p55 subfamily member 5, Patj |Human (Homo sapiens) [TaxId: 9606]
d3m52a_ : (HIS38) (ALA80) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pvea_ : (LEU28) (GLU60) [view usage] : a.189.1.1 |XPC-binding domain |XPC-binding domain |XPC-binding domain |XPC-binding domain of Rad23 homolog B (Hhr23b) |Human (Homo sapiens) [TaxId: 9606]
d1rhza_ : (ASN256) (THR337) [view usage] : f.41.1.1 |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Methanococcus jannaschii [TaxId: 2190]
d3lefa_ : (PRO131) (ALA165) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |automated matches |Artificial gene [TaxId: 32630]
d3hisa_ : (PHE178) (ALA219) [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Common soapwort (Saponaria officinalis) [TaxId: 3572]
d2gt4a_ : (THR131) (THR155) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d3puha1 : (VAL160) (SER204) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d1dgua_ : (ASN161) (SER178) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcium- and integrin-binding protein, CIB |Human (Homo sapiens) [TaxId: 9606]
d2b5ha_ : (THR11) (ALA51) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4jaxa2 : (SER305) (ASP342) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Kluyveromyces lactis [TaxId: 284590]
d2hbja1 : (VAL480) (ASN514) [view usage] : a.60.8.4 |SAM domain-like |HRDC-like |EXOSC10 HRDC domain-like |Exosome complex exonuclease RRP6 domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jr5a_ : (ASN4) (GLU39) [view usage] : a.150.1.1 |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Anti-sigma factor AsiA |Bacteriophage T4 [TaxId: 10665]
d1z6na1 : (GLN132) (ALA165) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Hypothetical protein PA1234 |Pseudomonas aeruginosa [TaxId: 287]
d2f8sa1 : (GLU208) (LYS238) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d1dzfa1 : (ARG7) (LYS45) [view usage] : c.52.3.1 |Restriction endonuclease-like |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2az0a1 : (SER3) (GLU70) [view usage] : a.30.8.1 |ROP-like |FHV B2 protein-like |FHV B2 protein-like |B2 |Flock house virus, FHV [TaxId: 12287]
d1y76a1 : (ASN4) (LEU64) [view usage] : a.194.1.1 |L27 domain |L27 domain |L27 domain |Associated tight junction protein Pals-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2uxna1 : (PHE231) (GLY260) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d3vqsc_ : (SER84) (GLU128) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1ar1a_ : (SER333) (HIS403) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Paracoccus denitrificans [TaxId: 266]
d1l7ra2 : (SER159) (SER204) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Bacterial cocaine esterase N-terminal domain |Rhodococcus sp. mb1 [TaxId: 51612]
d1tfra1 : (PRO282) (PHE305) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T4 RNase H |Bacteriophage T4 [TaxId: 10665]
d3i2ga1 : (SER159) (SER204) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d4lrlc_ : (SER37) (LEU90) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein EF1143 |Enterococcus faecalis [TaxId: 1351]
d1cb7b_ : (ASP96) (GLY131) [view usage] : c.1.19.2 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Glutamate mutase, large subunit |Glutamate mutase, large subunit |Clostridium cochlearium [TaxId: 1494]
d2ppva_ : (GLY55) (ILE100) [view usage] : c.143.1.0 |CofD-like |CofD-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d2dw4a1 : (THR230) (GLY260) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d1f3ya_ : (PRO139) (LEU165) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) |Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]
d1ahpa_ : (ASP700) (ASP760) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1szqa_ : (GLU326) (LEU357) [view usage] : e.44.1.1 |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |Escherichia coli [TaxId: 562]
d3ne1a_ : (SER44) (GLU84) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3h7ia2 : (PRO282) (PHE305) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T4 RNase H |Bacteriophage T4 [TaxId: 10665]
d4c2me1 : (ASN5) (CYS47) [view usage] : c.52.3.1 |Restriction endonuclease-like |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Eukaryotic RPB5 N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4e57a_ : (SER99) (ALA153) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |automated matches |Pseudomonas sp. [TaxId: 81841]
d3gnwb_ : (SER84) (THR130) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus isolate [TaxId: 420174]
d2cska_ : (TYR53) (GLU120) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b9za1 : (LYS4) (GLU70) [view usage] : a.30.8.1 |ROP-like |FHV B2 protein-like |FHV B2 protein-like |B2 |Flock house virus, FHV [TaxId: 12287]
d1rfza_ : (THR23) (SER56) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, c.69, d.165, a.127, a.211, c.47, c.55, d.153, c.87, a.25, f.24, c.52, b.34, a.4, a.39, d.150, a.29, d.42,
d.113, a.24, a.60, f.41, a.150, c.143, d.189, a.189, a.194, a.30, a.195, e.44, a.253