Tableau information
Concept source: d1iq8a1 amino acid (a.a.) range (PRO296)(GLU351)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO296) (GLU325) H1
(LEU328) (HIS339) H2
(HIS339) (GLU351) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -139.4° H2
H3 -27.2° -140.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xzms_ : (GLY17) (VAL50) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1h9tb2 : (ILE82) (VAL134) [view usage] : a.78.1.1 |GntR ligand-binding domain-like |GntR ligand-binding domain-like |GntR ligand-binding domain-like |Fatty acid responsive transcription factor FadR, C-terminal domain |Escherichia coli [TaxId: 562]
d1zt2b1 : (PRO63) (ASP114) [view usage] : a.262.1.1 |PriB N-terminal domain-like |PriB N-terminal domain-like |PriB N-terminal domain-like |DNA primase large subunit PriB, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d4bl2a1 : (GLU29) (ASP56) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2ilka_ : (SER51) (CYS108) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Human (Homo sapiens) [TaxId: 9606]
d1mixa1 : (GLN202) (GLY248) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Talin |Chicken (Gallus gallus) [TaxId: 9031]
d2cbia1 : (PRO499) (CYS551) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase, post-catalytic domain 3 |Clostridium perfringens [TaxId: 1502]
d3u5ez_ : (SER97) (SER132) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2ee4a_ : (PRO105) (HIS152) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4a19n_ : (LYS98) (SER140) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2jxla_ : (ASP2) (GLY34) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dysa_ : (ASP402) (VAL447) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d1ls4a_ : (ASN9) (ALA74) [view usage] : a.63.1.1 |Apolipophorin-III |Apolipophorin-III |Apolipophorin-III |Apolipophorin-III |Migratory locust (Locusta migratoria) [TaxId: 7004]
d2zavb_ : (THR135) (PRO157) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ilka_ : (SER51) (ARG106) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) |Human (Homo sapiens) [TaxId: 9606]
d1z3ix1 : (SER439) (PHE475) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d3hb6a_ : (PHE140) (SER180) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Proteus mirabilis [TaxId: 584]
d3tj3a_ : (SER85) (SER123) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mwsa1 : (LYS28) (ASN57) [view usage] : d.17.4.5 |Cystatin-like |NTF2-like |Penicillin binding protein 2a (PBP2A), N-terminal domain |Penicillin binding protein 2a (PBP2A), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4dkia1 : (LYS28) (ASP56) [view usage] : d.17.4.5 |Cystatin-like |NTF2-like |Penicillin binding protein 2a (PBP2A), N-terminal domain |Penicillin binding protein 2a (PBP2A), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1tkna_ : (VAL461) (ILE526) [view usage] : a.47.4.1 |STAT-like |CAPPD, an extracellular domain of amyloid beta A4 protein |CAPPD, an extracellular domain of amyloid beta A4 protein |CAPPD, an extracellular domain of amyloid beta A4 protein |Human (Homo sapiens) [TaxId: 9606]
d4ny0a2 : (PHE133) (SER179) [view usage] : a.11.2.0 |Acyl-CoA binding protein-like |Second domain of FERM |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vb5b_ : (GLU4) (LEU44) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Putative eIF-2B subunit 2-like protein PH0440 |Pyrococcus horikoshii [TaxId: 53953]
d2hm8a_ : (ASP414) (CYS447) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Programmed cell death 4, PDCD4 |Mouse (Mus musculus) [TaxId: 10090]
d1v7nx_ : (LEU48) (LEU108) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Thrombopoietin |Human (Homo sapiens) [TaxId: 9606]
d2jiwa1 : (SER440) (ILE495) [view usage] : a.246.1.0 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d2j4ga1 : (SER440) (ILE495) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Glucosaminidase GH84 post-catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d2p90a1 : (PRO211) (ARG274) [view usage] : c.56.8.1 |Phosphorylase/hydrolase-like |Cgl1923-like |Cgl1923-like |Hypothetical protein Cgl1923 |Corynebacterium glutamicum [TaxId: 1718]
d1nz6b_ : (GLY140) (GLY193) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |Auxilin J-domain |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.1, i.1, a.118, c.56, c.124, c.42, a.211, c.37, d.17, a.39, a.116, a.26, a.11, a.2, a.47, a.63, a.246, a.262, a.78