Tableau information
Concept source: d2jkrb_ amino acid (a.a.) range (THR499)(VAL540)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR499) (SER514) H1
(PRO517) (ASP533) H2
(ASP533) (VAL540) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -140.7° H2
H3 81.2° -127.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3u5eq_ : (ASN23) (PRO60) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2wn6a1 : (ASP19) (THR62) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium difficile [TaxId: 1496]
d1jasa_ : (ASN117) (SER152) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc2b [TaxId: 9606]
d4gyva_ : (GLU538) (GLN620) [view usage] : a.87.1.0 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2vkua_ : (GLY163) (ALA231) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2vl6a_ : (PHE49) (ASP86) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1hz4a_ : (ASP228) (LEU284) [view usage] : a.118.8.2 |alpha-alpha superhelix |TPR-like |Transcription factor MalT domain III |Transcription factor MalT domain III |Escherichia coli [TaxId: 562]
d2q81a_ : (LYS39) (SER65) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bqfb_ : (SER390) (LYS426) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1cvua1 : (ASN537) (VAL572) [view usage] : a.93.1.2 |Heme-dependent peroxidases |Heme-dependent peroxidases |Myeloperoxidase-like |Prostaglandin H2 synthase |Mouse (Mus musculus) [TaxId: 10090]
d3j39m_ : (PRO90) (ARG150) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1edua_ : (MSE90) (THR147) [view usage] : a.118.9.1 |alpha-alpha superhelix |ENTH/VHS domain |ENTH domain |Epsin 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1o7fa2 : (TRP15) (PHE47) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory domain of Epac2, domains 1 and 3 |Mouse (Mus musculus) [TaxId: 10090]
d2ij5a_ : (ASN195) (VAL218) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d2nxpb_ : (ASN258) (PHE305) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d1nnea1 : (ASP331) (ALA385) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Thermus aquaticus [TaxId: 271]
d1ewqa1 : (LEU332) (ALA385) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Thermus aquaticus [TaxId: 271]
d1zvda_ : (PRO507) (GLU538) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4h03a1 : (ASP12) (GLN54) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium perfringens [TaxId: 1502]
d1sf8a_ : (LEU576) (LEU622) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d1sf8g_ : (LEU576) (SER624) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d1sf8c_ : (VAL575) (SER624) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d3o5ta_ : (ARG81) (ASN126) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
d3ks0a_ : (HIS43) (LEU65) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3zbya_ : (LEU148) (ASN210) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1sf8h_ : (VAL575) (SER624) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d2oxra_ : (LEU164) (LEU194) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d1hpzb_ : (VAL254) (LYS311) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3buza1 : (LYS13) (SER53) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Enzymatic component (Ia) of iota-toxin |Clostridium perfringens [TaxId: 1502]
d1agra1 : (SER134) (THR177) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2woea_ : (VAL80) (ASN126) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d3s8fa_ : (ILE88) (LEU132) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1kjya1 : (ASP133) (THR177) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1fiua_ : (LEU103) (ALA130) [view usage] : c.52.1.10 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NgoIV |Restriction endonuclease NgoIV |Neisseria gonorrhoeae [TaxId: 485]
d2woca_ : (VAL80) (ASN126) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d2b4ka2 : (SER283) (ALA316) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Acetobacter pasteurianus [TaxId: 438]
d3g9da_ : (ARG81) (ASN126) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.82, c.69, a.104, i.1, a.118, a.93, b.40, c.37, d.166, c.87, d.20, f.24, c.52, d.148, d.42, a.87, a.66, d.120, a.209,
a.113, d.379, d.271