Tableau information
Concept source: d2r4za_ amino acid (a.a.) range (ASN32)(GLN83)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN32) (GLN45) H1
(ILE48) (LYS52) H2
(ASN63) (GLN83) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -111.1° H2
H3 107.5° 112.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fi0a1 : (PHE34) (GLY60) [view usage] : a.248.1.1 |SP0561-like |SP0561-like |SP0561-like |Hypothetical protein SPr0485/SP0561 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2fsna1 : (VAL206) (ALA233) [view usage] : c.55.1.12 |Ribonuclease H-like motif |Actin-like ATPase domain |Ta0583-like |Hypothetical protein Ta0583 |Thermoplasma acidophilum [TaxId: 2303]
d3a6db_ : (SER152) (LEU190) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1isna1 : (GLY161) (ARG196) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Merlin |Mouse (Mus musculus) [TaxId: 10090]
d2mnga_ : (CYS586) (LYS610) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hhwa2 : (LEU659) (GLN691) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d2r6ia1 : (LYS181) (GLY211) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d3tzua_ : (ASN89) (TRP108) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d3hoaa_ : (PHE326) (ALA351) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d3dwka2 : (ASN300) (SER327) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2, PBP2 |Staphylococcus aureus [TaxId: 1280]
d1h1oa1 : (LYS40) (GLN86) [view usage] : a.3.1.4 |Cytochrome c |Cytochrome c |Two-domain cytochrome c |Cytochrome c4 |Thiobacillus ferrooxidans [TaxId: 920]
d3t5pb_ : (SER146) (THR169) [view usage] : e.52.1.0 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d1yova_ : (LYS6) (ALA31) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1ofwa_ : (THR196) (ALA226) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d1etpa1 : (GLU37) (GLN88) [view usage] : a.3.1.4 |Cytochrome c |Cytochrome c |Two-domain cytochrome c |Cytochrome c4 |Pseudomonas stutzeri [TaxId: 316]
d3uhia_ : (LYS30) (GLN83) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d1e6va1 : (SER369) (THR420) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Alpha chain |Methanopyrus kandleri [TaxId: 2320]
d4mcaa_ : (ALA253) (ASN287) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Serratia plymuthica [TaxId: 1206776]
d1jkya1 : (GLN168) (GLU226) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2hdca_ : (LEU26) (CYS60) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Genesis |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4hrra_ : (ASP28) (SER83) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin I |Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
d4im9c_ : (ASN93) (LEU145) [view usage] : a.236.1.0 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d1c53a_ : (LYS33) (LEU79) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Desulfovibrio vulgaris, different strains [TaxId: 881]
d1dvha_ : (GLY33) (LEU79) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Desulfovibrio vulgaris, different strains [TaxId: 881]
d19hca_ : (THR196) (ALA226) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d2hq7a1 : (ARG92) (TYR116) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypotheical protein CAC3491 |Clostridium acetobutylicum [TaxId: 1488]
d2r6ib_ : (LYS181) (GLY211) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d1q2ha_ : (TRP23) (ALA83) [view usage] : a.34.4.1 |Dimerisation interlock |Phenylalanine zipper |Adapter protein APS, dimerisation domain |Adapter protein APS, dimerisation domain |Human (Homo sapiens) [TaxId: 9606]
d1zn3a_ : (GLU212) (PHE254) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d1w5ch_ : (ASP49) (GLY160) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d1t4fm_ : (THR49) (LEU107) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d3rdkb_ : (ASP149) (ASN182) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d1rdfa_ : (ASP55) (ALA102) [view usage] : c.108.1.3 |HAD-like |HAD-like |Phosphonoacetaldehyde hydrolase-like |Phosphonoacetaldehyde hydrolase |Bacillus cereus [TaxId: 1396]
d4f7wd_ : (GLU1233) (GLU1288) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
d2g25a2 : (PHE337) (ALA358) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Pyruvate dehydrogenase E1 component, PP module |Escherichia coli [TaxId: 562]
d3a6kc_ : (SER152) (LEU190) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1r1ra1 : (ALA101) (ILE135) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d2ydaa_ : (LEU203) (GLY254) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d3nvia_ : (ASP221) (GLY277) [view usage] : a.183.1.0 |Nop domain |Nop domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1q3ka_ : (SER152) (LEU190) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1iioa_ : (GLY55) (GLY80) [view usage] : a.39.4.1 |EF Hand-like |Hypothetical protein MTH865 |Hypothetical protein MTH865 |Hypothetical protein MTH865 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3p71t_ : (MET281) (TYR315) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cnog_ : (LYS36) (ASN82) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Pseudomonas nautica [TaxId: 2743]
d1jkmb_ : (ASP241) (TYR272) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Carboxylesterase |Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
d1v5fa1 : (ASN242) (ALA272) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d3dwkb2 : (ASN300) (SER327) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2, PBP2 |Staphylococcus aureus [TaxId: 1280]
d2d4wa2 : (SER313) (LYS337) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cellulomonas sp. [TaxId: 40001]
d3a6fa_ : (SER152) (LEU190) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d3a6ke_ : (SER152) (LEU190) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d3c07a2 : (SER129) (ILE181) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator SCO4850 |Streptomyces coelicolor [TaxId: 1902]
d1kq3a_ : (ALA251) (ASP285) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Glycerol dehydrogenase |Thermotoga maritima [TaxId: 2336]
d3ckma1 : (ILE489) (GLN529) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |YraM C-terminal domain |Haemophilus influenzae [TaxId: 727]
d1n1ma2 : (ARG658) (SER686) [view usage] : c.69.1.24 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |DPP6 catalytic domain-like |Dipeptidyl peptidase IV/CD26, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1pota_ : (LEU104) (SER126) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Spermidine/putrescine-binding protein PotD |Escherichia coli [TaxId: 562]
d4h8ea_ : (GLY154) (LEU188) [view usage] : c.101.1.1 |Undecaprenyl diphosphate synthase |Undecaprenyl diphosphate synthase |Undecaprenyl diphosphate synthase |automated matches |Staphylococcus aureus [TaxId: 158879]
d3puhb1 : (GLU161) (SER204) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d2gp3b_ : (PRO212) (LYS241) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d3dxta_ : (GLN221) (LYS245) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bm4a_ : (GLY70) (CYS121) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
d4g91b_ : (LYS42) (ALA90) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |automated matches |Aspergillus nidulans [TaxId: 227321]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, b.82, c.69, c.94, c.108, c.66, d.92, c.93, a.93, e.22, c.37, c.36, c.55, i.5, c.31, b.45, c.101, b.84,
c.111, a.1, a.4, a.39, a.138, a.3, c.125, a.42, e.52, a.11, a.22, a.98, a.121, a.89, d.381, a.236, a.183, a.248, a.34