Tableau information
Concept source: d1ffvc2 amino acid (a.a.) range (PRO92)(ILE116)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO92) (ILE101) H1
(ASP103) (ARG109) H2
(THR111) (ILE116) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 122.3° H2
H3 78.9° 92.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h44a_ : (PRO167) (PHE190) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
d3ocea_ : (SER101) (ASN135) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d3cwsc1 : (TYR239) (THR274) [view usage] : a.96.1.3 |DNA-glycosylase |DNA-glycosylase |DNA repair glycosylase, 2 C-terminal domains |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d1iw7e_ : (GLY5) (GLY71) [view usage] : a.143.1.1 |RPB6/omega subunit-like |RPB6/omega subunit-like |RNA polymerase omega subunit |RNA polymerase omega subunit |Thermus thermophilus [TaxId: 274]
d1a6sa_ : (GLY1) (SER47) [view usage] : a.61.1.4 |Retroviral matrix proteins |Retroviral matrix proteins |GAG polyprotein M-domain |GAG polyprotein M-domain |Rous sarcoma virus [TaxId: 11886]
d1szhb_ : (ASN134) (CYS162) [view usage] : a.226.1.1 |Her-1 |Her-1 |Her-1 |Her-1 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1okca_ : (TYR131) (GLN174) [view usage] : f.42.1.1 |Mitochondrial carrier |Mitochondrial carrier |Mitochondrial carrier |ADP,ATP carrier protein |Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
d2luca_ : (ALA48) (ALA98) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vfba_ : (ALA242) (VAL273) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium marinum [TaxId: 1781]
d1ozoa_ : (PRO42) (HIS86) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100p [TaxId: 9606]
d2thia_ : (GLY161) (TYR214) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Thiaminase I |Paenibacillus thiaminolyticus [TaxId: 49283]
d2zhxa_ : (PRO5) (GLY39) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1nlaa_ : (GLN9) (GLY49) [view usage] : a.43.1.1 |Ribbon-helix-helix |Ribbon-helix-helix |Arc/Mnt-like phage repressors |Arc repressor |Salmonella bacteriophage P22 [TaxId: 10754]
d2d3wa_ : (SER94) (THR139) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3jw0d_ : (VAL797) (GLY834) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ji8a_ : (ILE72) (GLY103) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |Pyrobaculum aerophilum [TaxId: 13773]
d2c4ea_ : (LEU263) (HIS300) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d4im7a2 : (LEU283) (GLU317) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli [TaxId: 199310]
d4oswa_ : (PRO693) (LYS720) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |automated matches |Xanthomonas campestris [TaxId: 329463]
d3uvia_ : (THR71) (GLY94) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d2pi0c_ : (GLY52) (LEU84) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d1n5wc2 : (ILE93) (ALA116) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
d1m1pa_ : (LYS4) (HIS39) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella oneidensis [TaxId: 70863]
d1w3oa1 : (GLY125) (ARG159) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |NimA-related protein DR0842 |Deinococcus radiodurans [TaxId: 1299]
d2j7ak_ : (MET346) (TYR396) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2c35a1 : (THR107) (ARG138) [view usage] : a.60.8.2 |SAM domain-like |HRDC-like |RNA polymerase II subunit RBP4 (RpoF) |RNA polymerase II subunit RBP4 (RpoF) |Human (Homo sapiens) [TaxId: 9606]
d1oxha1 : (PRO58) (ASN90) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4ee8a_ : (ALA5) (ASP43) [view usage] : d.313.1.0 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |automated matches |automated matches |Streptomyces cinnamonensis [TaxId: 1900]
d1gaja_ : (GLN92) (PHE119) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d1ea1a_ : (ASP135) (GLY175) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome p450 14 alpha-sterol demethylase (cyp51) |Mycobacterium tuberculosis [TaxId: 1773]
d3tbja_ : (ASN97) (HIS138) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d2rjta1 : (PRO58) (ASN90) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2dnsa_ : (ILE85) (ASN105) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-Amino acid amidase DaaA |Ochrobactrum anthropi [TaxId: 529]
d1veaa_ : (ASP46) (LEU97) [view usage] : d.275.1.1 |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Bacillus subtilis [TaxId: 1423]
d1esja1 : (HIS187) (ALA237) [view usage] : c.72.1.2 |Ribokinase-like |Ribokinase-like |Thiamin biosynthesis kinases |Hydroxyethylthiazole kinase (THZ kinase, ThiK) |Bacillus subtilis [TaxId: 1423]
d2axta1 : (TRP14) (ALA54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Photosystem Q(B) protein 1, PsbA1 |Thermosynechococcus elongatus [TaxId: 146786]
d2yfhb2 : (ALA394) (GLN444) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Clostridium symbiosum [TaxId: 1512]
d1g1ub_ : (THR266) (SER317) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoid-X receptor alpha (RXR-alpha) |Human (Homo sapiens) [TaxId: 9606]
d1a0aa_ : (HIS7) (ASN59) [view usage] : a.38.1.1 |HLH-like |HLH, helix-loop-helix DNA-binding domain |HLH, helix-loop-helix DNA-binding domain |Pho4 B/HLH domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ckjb_ : (LEU216) (LYS247) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2md7b_ : (ASP24) (MET53) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ccda1 : (LEU141) (GLY177) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4g7he_ : (GLY5) (GLY71) [view usage] : a.143.1.1 |RPB6/omega subunit-like |RPB6/omega subunit-like |RNA polymerase omega subunit |RNA polymerase omega subunit |Thermus thermophilus HB8 [TaxId: 300852]
d4pj0a_ : (GLU15) (ALA55) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1bola_ : (ILE72) (HIS109) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh |Rhizopus niveus [TaxId: 4844]
d1ffvc2 : (PRO92) (ILE116) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d3sv0a_ : (LEU211) (CYS241) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Oryza sativa [TaxId: 39947]
d1efza_ : (THR71) (GLY94) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d1ecwa_ : (SER9) (ASN53) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |SIV matrix antigen |Simian immunodeficiency virus [TaxId: 11723]
d3uzpa_ : (LEU211) (CYS241) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lnsa1 : (TRP71) (ASN103) [view usage] : a.40.2.1 |CH domain-like |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |Lactococcus lactis [TaxId: 1358]
d1e9xa_ : (ASP135) (GLY175) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome p450 14 alpha-sterol demethylase (cyp51) |Mycobacterium tuberculosis [TaxId: 1773]
d4hqva_ : (THR71) (GLY94) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 264203]
d2o5ie_ : (GLY5) (GLY71) [view usage] : a.143.1.1 |RPB6/omega subunit-like |RPB6/omega subunit-like |RNA polymerase omega subunit |RNA polymerase omega subunit |Thermus thermophilus HB8 [TaxId: 300852]
d1v9db_ : (ASP1064) (ALA1148) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Diaphanous protein homolog 1, dia1 |Mouse (Mus musculus) [TaxId: 10090]
d3cwvb2 : (ALA266) (GLN297) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, e.3, c.1, c.94, a.104, c.2, a.93, a.127, c.72, d.144, c.37, c.18, c.95, d.14, d.3, f.26, a.96, b.45, a.123, d.124,
a.100, a.4, d.145, a.39, a.138, d.148, a.40, a.60, a.61, a.38, f.42, d.313, a.226, a.207, a.43, d.203, d.275, a.143, g.50