Tableau information
Concept source: d3axyc_ amino acid (a.a.) range (ALA115)(ASP163)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA115) (PHE121) H1
(LEU123) (GLU135) H2
(ALA140) (ASP163) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -5.2° H2
H3 -162.2° -157.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1a7ma_ : (THR75) (LEU133) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Leukemia inhibitory factor (LIF) |Mouse (Mus musculus) [TaxId: 10090]
d1hy1b_ : (SER112) (ASN195) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1r8ia_ : (VAL144) (ALA218) [view usage] : a.8.7.1 |immunoglobulin/albumin-binding domain-like |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Typo IV secretion system protein TraC |Escherichia coli [TaxId: 562]
d2ykza_ : (ALA77) (ASP121) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d1occb2 : (PRO15) (GLU89) [view usage] : f.17.2.1 |Transmembrane helix hairpin |Cytochrome c oxidase subunit II-like, transmembrane region |Cytochrome c oxidase subunit II-like, transmembrane region |Mitochondrial cytochrome c oxidase, subunit II |Cow (Bos taurus) [TaxId: 9913]
d3f31b_ : (ASN77) (GLY142) [view usage] : a.7.1.0 |Spectrin repeat-like |Spectrin repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l8db_ : (LYS396) (LYS496) [view usage] : h.4.12.1 |Antiparallel coiled-coil |Rad50 coiled-coil Zn hook |Rad50 coiled-coil Zn hook |Rad50 coiled-coil Zn hook |Pyrococcus furiosus [TaxId: 2261]
d4dgta_ : (SER335) (GLY358) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d2c2fa_ : (ASP145) (ASP202) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d1olpd1 : (THR10) (LEU45) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium absonum [TaxId: 29369]
d1ccda_ : (CYS3) (ASN29) [view usage] : a.101.1.1 |Uteroglobin-like |Uteroglobin-like |Uteroglobin-like |Clara cell 17kDa protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3k1se_ : (THR3) (ALA52) [view usage] : a.7.2.0 |Spectrin repeat-like |Enzyme IIa from lactose specific PTS, IIa-lac |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3wcyi_ : (SER112) (GLN160) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interferon-beta |Mouse (Mus musculus) [TaxId: 10090]
d2qwob_ : (THR858) (GLN904) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |Auxilin J-domain |Cow (Bos taurus) [TaxId: 9913]
d2ei4a_ : (ARG110) (ARG168) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
d2pfma_ : (ILE274) (LEU336) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1syqa2 : (GLN185) (SER252) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d2f66d_ : (THR322) (THR381) [view usage] : a.2.17.1 |Long alpha-hairpin |Endosomal sorting complex assembly domain |VPS23 C-terminal domain |Vacuolar protein sorting-associated protein 23, VPS23 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rsra_ : (LEU186) (SER254) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
d1nz6a_ : (PRO47) (GLY93) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |Auxilin J-domain |Cow (Bos taurus) [TaxId: 9913]
d1mhsa_ : (GLY670) (ALA735) [view usage] : i.18.1.1 |Membrane ion ATPase |Membrane ion ATPase |Membrane ion ATPase |Proton ATPase |Fungus (Neurospora crassa) [TaxId: 5141]
d4fpda_ : (GLN105) (MET163) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]
d1j90b_ : (SER106) (SER142) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxyribonucleoside kinase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1h2sa_ : (SER153) (GLU222) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1ar1a_ : (TRP443) (PHE512) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Paracoccus denitrificans [TaxId: 266]
d2ib0a1 : (SER95) (ALA150) [view usage] : a.25.1.9 |Ferritin-like |Ferritin-like |Rv2844-like |Hypothetical protein Rv2844 |Mycobacterium tuberculosis [TaxId: 1773]
d1skva_ : (SER2) (HIS64) [view usage] : a.30.5.1 |ROP-like |Hypothetical protein D-63 |Hypothetical protein D-63 |Hypothetical protein D-63 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d3gwla_ : (PRO106) (LEU142) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |African swine fever virus ba71v [TaxId: 10498]
d1mfza1 : (LEU269) (ASN299) [view usage] : a.100.1.4 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |UDP-glucose/GDP-mannose dehydrogenase dimerisation domain |GDP-mannose 6-dehydrogenase, middle domain |Pseudomonas aeruginosa [TaxId: 287]
d4e0ha_ : (GLU88) (ILE127) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2jcsa_ : (SER106) (ILE143) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3w4yb_ : (ASP86) (ILE127) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1m56c_ : (ILE16) (GLY69) [view usage] : f.25.1.1 |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Bacterial aa3 type cytochrome c oxidase subunit III |Rhodobacter sphaeroides [TaxId: 1063]
d1st6a1 : (MET74) (THR125) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Chicken (Gallus gallus) [TaxId: 9031]
d3mkha1 : (LEU75) (ALA109) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d1knya1 : (GLN129) (HIS181) [view usage] : a.24.16.1 |Four-helical up-and-down bundle |Nucleotidyltransferase substrate binding subunit/domain |Kanamycin nucleotidyltransferase (KNTase), C-terminal domain |Kanamycin nucleotidyltransferase (KNTase), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1o9ia_ : (PRO19) (LEU81) [view usage] : a.25.1.3 |Ferritin-like |Ferritin-like |Manganese catalase (T-catalase) |Manganese catalase (T-catalase) |Lactobacillus plantarum [TaxId: 1590]
d1j90a_ : (SER106) (SER142) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxyribonucleoside kinase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1fftb2 : (ILE36) (THR111) [view usage] : f.17.2.1 |Transmembrane helix hairpin |Cytochrome c oxidase subunit II-like, transmembrane region |Cytochrome c oxidase subunit II-like, transmembrane region |Cytochrome O ubiquinol oxidase, subunit II |Escherichia coli [TaxId: 562]
d2gsma_ : (SER341) (SER402) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d3dtuc_ : (SER341) (SER402) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d3pvrb_ : (SER1) (PHE52) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli [TaxId: 511145]
d1piea2 : (ASP273) (GLU321) [view usage] : d.58.26.7 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Galactokinase |Galactokinase |Lactococcus lactis [TaxId: 1358]
d3s8fa_ : (TRP143) (GLY214) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1pima_ : (LEU186) (SER254) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
d4gyca_ : (SER154) (LEU219) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1jkua_ : (PRO19) (LEU81) [view usage] : a.25.1.3 |Ferritin-like |Ferritin-like |Manganese catalase (T-catalase) |Manganese catalase (T-catalase) |Lactobacillus plantarum [TaxId: 1590]
d1ud0c_ : (VAL535) (GLN612) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |DnaK |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fr7a_ : (ASN176) (SER202) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1lr1a_ : (SER1) (GLU51) [view usage] : a.155.1.1 |H-NS histone-like proteins |H-NS histone-like proteins |H-NS histone-like proteins |H1 protein (H-NS) |Escherichia coli [TaxId: 562]
d2okub_ : (GLN506) (PHE558) [view usage] : a.48.5.1 |N-cbl like |PG0775 C-terminal domain-like |PG0775 C-terminal domain-like |Uncharacterized protein PG0775 |Porphyromonas gingivalis [TaxId: 837]
d1k0fa_ : (ASP137) (LEU188) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Periplasmic zinc binding protein TroA |Treponema pallidum [TaxId: 160]
d4m1ib_ : (TYR198) (PRO246) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d3qjqa_ : (SER64) (ASN127) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d3f31a_ : (ILE99) (LEU146) [view usage] : a.7.1.0 |Spectrin repeat-like |Spectrin repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, a.104, d.58, a.118, c.92, a.127, c.37, e.6, a.25, f.24, a.100, f.13, a.124, a.24, a.26, h.4, a.8, a.7, f.25, a.2,
a.48, i.18, a.30, f.17, a.101, a.155