Tableau information
Concept source: d2pbga_ amino acid (a.a.) range (LYS244)(ASN291)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS244) (THR250) H1
(CYS256) (GLY271) H2
(ARG277) (ASN291) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -139.0° H2
H3 -76.2° 134.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o7fa1 : (VAL219) (LEU294) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Regulatory domain of epac2, domain 2 |Mouse (Mus musculus) [TaxId: 10090]
d4ooya_ : (ARG114) (THR137) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1tgra_ : (GLU3) (MET49) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin-like growth factor |Human (Homo sapiens) [TaxId: 9606]
d3wffa_ : (GLN916) (GLY974) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a28a_ : (VAL863) (GLY923) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Progesterone receptor |Human (Homo sapiens) [TaxId: 9606]
d4nb6b_ : (SER392) (GLN466) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1epwa4 : (PHE752) (GLU858) [view usage] : h.4.2.1 |Antiparallel coiled-coil |Clostridium neurotoxins, "coiled-coil" domain |Clostridium neurotoxins, "coiled-coil" domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d2dgaa_ : (LEU291) (LEU322) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
d1j4na_ : (ASN78) (ASP160) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin-1 |Cow (Bos taurus) [TaxId: 9913]
d1bwoa_ : (GLY25) (GLY74) [view usage] : a.52.1.1 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Plant lipid-transfer and hydrophobic proteins |Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) |Wheat (Triticum aestivum), L. seeds [TaxId: 4565]
d1gpxa_ : (CYS45) (CYS73) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d3wfga_ : (SER917) (GLY974) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4nb6a_ : (SER392) (PHE465) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ov9a1 : (ALA26) (PRO100) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d3b4ua_ : (VAL246) (ARG290) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1uzra_ : (THR252) (LEU291) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Mycobacterium tuberculosis [TaxId: 1773]
d1jtsc_ : (SER22) (THR102) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Escherichia coli, Dps [TaxId: 562]
d2a3ia_ : (SER914) (GLY974) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s1ya_ : (ARG114) (THR137) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2me8a_ : (GLN6) (ARG105) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Apoptosis regulator Bcl-xL |Human (Homo sapiens) [TaxId: 9606]
d2ov9c_ : (ALA26) (PRO100) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1z1wa2 : (LEU284) (ASP347) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Tricorn protease interacting factor F3 catalytic domain |Thermoplasma acidophilum [TaxId: 2303]
d1uujd_ : (SER4) (TYR47) [view usage] : a.221.1.1 |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1we1a_ : (GLU35) (THR115) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase-1 (HO-1) |Synechocystis sp. [TaxId: 1143]
d4igia_ : (TYR1078) (GLY1122) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4gkib_ : (ASP144) (LEU236) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d1wpna_ : (LYS136) (GLY188) [view usage] : c.107.1.1 |DHH phosphoesterases |DHH phosphoesterases |Manganese-dependent inorganic pyrophosphatase (family II) |Manganese-dependent inorganic pyrophosphatase (family II) |Bacillus subtilis [TaxId: 1423]
d2wzxa_ : (ARG114) (THR137) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1h6ia_ : (PRO77) (ASP158) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin-1 |Human (Homo sapiens) [TaxId: 9606]
d2r2fb_ : (TRP246) (LEU286) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Salmonella typhimurium [TaxId: 90371]
d1t3wa_ : (LYS447) (PRO480) [view usage] : a.236.1.1 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |Escherichia coli [TaxId: 562]
d1wwia1 : (ASP21) (ALA91) [view usage] : a.22.1.4 |Histone-fold |Histone-fold |Bacterial histone-fold protein |Hypothetical protein TTHA1479 |Thermus thermophilus [TaxId: 274]
d1r2fb_ : (LEU254) (LEU286) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Salmonella typhimurium [TaxId: 90371]
d3ptka_ : (ASP280) (LEU309) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rice (Oryza sativa) [TaxId: 4530]
d1tj7a_ : (SER108) (GLY217) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Escherichia coli [TaxId: 562]
d1ny6h_ : (ILE318) (SER370) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d1tuej_ : (ALA65) (THR108) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d2xdia_ : (PRO45) (LEU104) [view usage] : a.4.12.1 |DNA/RNA-binding 3-helical bundle |TrpR-like |Trp repressor, TrpR |automated matches |Escherichia coli [TaxId: 562]
d1uujc_ : (SER4) (ALA48) [view usage] : a.221.1.1 |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4gkhe_ : (ASP144) (LEU236) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, d.92, a.127, d.144, c.37, c.107, c.62, a.132, a.123, a.25, d.38, b.91, a.4, d.15, f.1, f.19, h.4, a.52, a.22,
a.236, g.1, a.221