Tableau information
Concept source: d1maad_ amino acid (a.a.) range (SER240)(LEU289)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER240) (GLY256) H1
(ASP266) (ARG276) H2
(ALA278) (LEU289) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 54.7° H2
H3 128.2° 120.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2g5gx1 : (GLY156) (HIS208) [view usage] : c.150.1.1 |EreA/ChaN-like |EreA/ChaN-like |ChaN-like |Heme transport protein ChaN |Campylobacter jejuni [TaxId: 197]
d4tpka_ : (TYR237) (PRO281) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tbxb_ : (TYR8) (PHE36) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Hypothetical protein F93 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d1f82a_ : (PRO223) (GLY272) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1mt0a_ : (SER558) (LEU591) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Haemolysin B ATP-binding protein |Escherichia coli [TaxId: 562]
d1hwya2 : (ASN8) (ILE52) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Cow (Bos taurus) [TaxId: 9913]
d3mzia_ : (VAL106) (ILE139) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Synechocystis sp. PCC 6803 [TaxId: 1148]
d3lwba2 : (THR338) (ARG368) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4nb6b_ : (GLY363) (HIS390) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mv5d_ : (THR3432) (MET3466) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Multidrug resistance ABC transporter LmrA, C-terminal domain |Lactococcus lactis [TaxId: 1358]
d1i4wa_ : (VAL256) (GLY282) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Transcription factor sc-mtTFB |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ntwa_ : (GLY2377) (LEU2407) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2nvua_ : (GLY5) (ALA31) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1l5va_ : (ASP7) (LEU36) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1pula1 : (PHE83) (ALA117) [view usage] : a.39.1.11 |EF Hand-like |EF-hand |p25-alpha |Hypothetical protein c32e8.3 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2hfnb_ : (THR106) (TYR143) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1143]
d3b87a_ : (MET82) (ALA117) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1x0pe_ : (ASP4102) (GLN4141) [view usage] : d.58.10.2 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |BLUF domain |Hypothetical protein Tll0078 |Thermosynechococcus elongatus [TaxId: 146786]
d1nkta1 : (HIS263) (GLU299) [view usage] : a.162.1.1 |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Mycobacterium tuberculosis [TaxId: 1773]
d4a16a_ : (SER240) (LEU289) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4bc1a_ : (SER240) (PRO290) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Mouse (Mus musculus) [TaxId: 10090]
d1vqrc_ : (ASP49) (ALA92) [view usage] : a.211.1.3 |HD-domain/PDEase-like |HD-domain/PDEase-like |modified HD domain |Hypothetical protein Cj0248 |Campylobacter jejuni [TaxId: 197]
d1llib_ : (THR8) (LEU40) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |lambda C1 repressor, DNA-binding domain |Bacteriophage lambda [TaxId: 10710]
d3taga2 : (ALA629) (ARG656) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3ldsa2 : (ALA629) (ARG656) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4aqdb_ : (SER235) (PRO281) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nfpa_ : (ASN137) (ASN169) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium leiognathi [TaxId: 553611]
d1oa0a_ : (LYS119) (GLY164) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio desulfuricans [TaxId: 876]
d2cfob2 : (LYS436) (LEU486) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d2hfoa_ : (THR106) (ILE142) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1ni7a_ : (PRO10) (LEU44) [view usage] : d.224.1.1 |SufE/NifU |SufE/NifU |SufE-like |Hypothetical protein YgdK |Escherichia coli [TaxId: 562]
d4nb6a_ : (GLY363) (HIS390) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1maaa_ : (SER240) (LEU289) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Mouse (Mus musculus) [TaxId: 10090]
d2ebfx2 : (THR878) (ARG910) [view usage] : c.150.1.2 |EreA/ChaN-like |EreA/ChaN-like |PMT domain-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d2cfoa2 : (GLY438) (THR483) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d3l0la_ : (GLY384) (ALA409) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x0pa1 : (ASP202) (MET239) [view usage] : d.58.10.2 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |BLUF domain |Hypothetical protein Tll0078 |Thermosynechococcus elongatus [TaxId: 146786]
d2p19b_ : (PRO59) (GLY82) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator Cgl0157/Cg0196 |Corynebacterium glutamicum [TaxId: 1718]
d3etda1 : (ASN8) (LYS53) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1e68a_ : (SER37) (TRP70) [view usage] : a.64.2.1 |Saposin-like |Bacteriocin AS-48 |Bacteriocin AS-48 |Bacteriocin AS-48 |Enterococcus faecalis [TaxId: 1351]
d1vs6n1 : (SER59) (PHE80) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Escherichia coli [TaxId: 562]
d1t8qa_ : (ASP87) (SER114) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1mmog_ : (PHE128) (GLY160) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d4ljxa_ : (ASP271) (LEU301) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tbja_ : (HIS138) (GLY183) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1tfea_ : (SER109) (VAL155) [view usage] : d.43.1.1 |EF-Ts domain-like |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Elongation factor Ts (EF-Ts), dimerisation domain |Thermus thermophilus [TaxId: 274]
d1i37a_ : (ARG831) (SER865) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Androgen receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1dj8a_ : (ASP51) (LYS87) [view usage] : a.57.1.1 |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Escherichia coli [TaxId: 562]
d4c5ja_ : (GLN205) (ASN247) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d2hd1a_ : (PHE254) (CYS291) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d3fgcd_ : (ASP235) (SER269) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |automated matches |Vibrio harveyi [TaxId: 669]
d2hldo3 : (GLY364) (SER397) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3sf6a1 : (GLY15) (ILE45) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4o8mg_ : (LEU295) (PHE328) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d4jvaa1 : (THR136) (MET168) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2remc_ : (VAL87) (GLY123) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1e4oa_ : (ASP7) (LEU36) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d3b6xa_ : (MET82) (GLU115) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Odorant binding protein LUSH |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1mx1b_ : (LYS2262) (MET2301) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d2hyda1 : (THR430) (LEU463) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Putative multidrug export ATP-binding/permease protein SAV1866 |Staphylococcus aureus [TaxId: 1280]
d1e3ma1 : (ASP270) (HIS312) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Escherichia coli [TaxId: 562]
d1tq6a_ : (LEU302) (ILE345) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Interferon-inducible GTPase |Mouse (Mus musculus) [TaxId: 10090]
d1tbxa_ : (TYR8) (PHE36) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Hypothetical protein F93 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d1gnla_ : (LYS119) (GLY164) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio desulfuricans [TaxId: 876]
d3tz5a1 : (VAL135) (LEU180) [view usage] : a.29.5.0 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4mx6a_ : (PRO317) (ALA337) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d1rfzc_ : (LEU9) (SER56) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
d2aelb_ : (SER174) (MET228) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1maad_ : (SER240) (LEU289) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Mouse (Mus musculus) [TaxId: 10090]
d2a0ja_ : (SER21) (LEU54) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d2ecpa_ : (ASN23) (GLN66) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1evea_ : (SER237) (LEU282) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d1t8qd_ : (ASP87) (SER114) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d2akja4 : (VAL286) (MET330) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d1ydya_ : (ASP87) (SER114) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1t8qb_ : (ASP87) (SER114) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1x3aa1 : (SER60) (THR94) [view usage] : a.240.1.1 |BSD domain-like |BSD domain-like |BSD domain |Synapse associated protein 1, SYAP1 |Human (Homo sapiens) [TaxId: 9606]
d4tlga2 : (PHE198) (LYS216) [view usage] : c.13.1.0 |SpoIIaa-like |CRAL/TRIO domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g2ra_ : (ASP52) (GLY95) [view usage] : d.192.1.1 |YlxR-like |YlxR-like |YlxR-like |Hypothetical cytosolic protein SP0554 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1rfzd_ : (LEU9) (SER56) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |YutG homologue |Bacillus stearothermophilus [TaxId: 1422]
d2pc8a_ : (SER33) (ILE66) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, c.69, c.94, d.58, a.128, c.66, d.92, a.211, c.72, c.37, c.47, e.6, c.87, c.13, a.123, d.124, c.111, d.134,
d.142, a.4, a.39, e.26, c.58, a.29, a.23, d.224, d.112, a.35, a.113, a.69, a.64, a.144, a.97, a.57, c.150, a.195, a.162, d.43,
d.190, d.188, a.240, d.192