Tableau information
Concept source: d2pf4b_ amino acid (a.a.) range (GLY396)(ASP440)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY396) (ASP414) H1
(LYS416) (GLY435) H2
(GLY435) (ASP440) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -153.9° H2
H3 -44.0° 134.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3q0ma_ : (SER830) (ASP859) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d2ijcf_ : (THR82) (GLY141) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d1d1da1 : (ASP191) (LYS227) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |RSV capsid protein |Rous sarcoma virus [TaxId: 11886]
d4f7id_ : (PRO287) (ALA348) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3wu2c_ : (PRO80) (ALA133) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
d2pfxa1 : (ASP119) (ALA178) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Uncharacterized protein TM1040_2465 |Silicibacter sp. tm1040 [TaxId: 292414]
d1m8yb_ : (ARG831) (ASP859) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d1bgfa_ : (GLU50) (ALA118) [view usage] : a.90.1.1 |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Mouse (Mus musculus) [TaxId: 10090]
d2xy8b_ : (GLU12) (ASN65) [view usage] : a.237.1.1 |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |DNA polymerase III theta subunit-like |Theta subunit of DNA polymerase III |Escherichia coli [TaxId: 562]
d1jr3e1 : (ASN209) (GLY261) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |delta prime subunit |Escherichia coli [TaxId: 562]
d3ci0k2 : (ASN97) (PHE140) [view usage] : a.60.16.1 |SAM domain-like |GspK insert domain-like |GspK insert domain-like |Pseudopilin GspK |Escherichia coli [TaxId: 562]
d2crua1 : (ASP48) (GLN101) [view usage] : a.5.6.1 |RuvA C-terminal domain-like |Double-stranded DNA-binding domain |Double-stranded DNA-binding domain |Programmed cell death protein 5 |Human (Homo sapiens) [TaxId: 9606]
d2hv6a1 : (VAL132) (ARG200) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA |Human (Homo sapiens) [TaxId: 9606]
d4dzwa_ : (LEU95) (SER173) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2y40b_ : (PRO287) (LEU344) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d3c1lb_ : (SER116) (ILE174) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |automated matches |Mesorhizobium loti [TaxId: 266835]
d4arxd1 : (GLU90) (LEU158) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1n4pb_ : (MET193) (PHE240) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1aora1 : (GLU433) (GLY492) [view usage] : a.110.1.1 |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d3j6vp_ : (LYS85) (GLU134) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d1qzwa2 : (ILE297) (ILE352) [view usage] : a.36.1.1 |Signal peptide-binding domain |Signal peptide-binding domain |Signal peptide-binding domain |Signal sequence binding protein Ffh |Sulfolobus solfataricus [TaxId: 2287]
d1sxjb1 : (LEU234) (LEU277) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |Replication factor C4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3q0mb_ : (SER830) (ASP859) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d2ijci_ : (THR82) (GLY141) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d3lhra_ : (THR44) (ASP92) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l0la_ : (SER413) (LEU466) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lw1b_ : (ALA115) (SER175) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d1j7xa_ : (PRO3) (LEU58) [view usage] : c.14.1.2 |ClpP/crotonase |ClpP/crotonase |Tail specific protease, catalytic domain |Interphotoreceptor retinoid-binding protein IRBP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1tmqb_ : (ASN515) (MET564) [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
d1evua4 : (SER413) (GLU434) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d5reqa1 : (GLU506) (GLU553) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1sg4b_ : (ASN135) (GLY167) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Human (Homo sapiens) [TaxId: 9606]
d2prrc_ : (PRO121) (GLY179) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Uncharacterized protein Reut_A2532 |Ralstonia eutropha [TaxId: 106590]
d2uw1b_ : (SER179) (LYS257) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Hedera helix [TaxId: 4052]
d1gu9l_ : (LYS114) (THR170) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d4wuoa_ : (PRO287) (ALA347) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d4eg5b2 : (ASP691) (GLY737) [view usage] : a.27.1.0 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d2cjla_ : (THR159) (GLY206) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d2io2c1 : (GLU467) (GLY521) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1y8ba_ : (SER588) (ASP674) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d4jf8a_ : (GLU95) (PHE136) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella birtlesii [TaxId: 111504]
d2gp3a_ : (TRP296) (GLY335) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d1occh_ : (GLN25) (GLU78) [view usage] : a.51.1.1 |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cow (Bos taurus) [TaxId: 9913]
d1qrja1 : (PRO131) (TYR174) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HTLV-I capsid protein |Human T-cell leukemia virus type 1 [TaxId: 11908]
d4nhfa_ : (GLU95) (ASP141) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d2ayqb_ : (PRO293) (ASN357) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Bacillus coagulans [TaxId: 1398]
d1n1za2 : (LEU360) (GLY408) [view usage] : a.128.1.3 |Terpenoid synthases |Terpenoid synthases |Terpenoid cyclase C-terminal domain |(+)-bornyl diphosphate synthase |Garden sage (Salvia officinalis) [TaxId: 38868]
d2uw1a_ : (SER179) (LYS257) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Hedera helix [TaxId: 4052]
d3bbop1 : (LYS135) (ALA170) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1g1ub_ : (LYS364) (LEU420) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoid-X receptor alpha (RXR-alpha) |Human (Homo sapiens) [TaxId: 9606]
d2ijcb_ : (THR82) (GLY141) [view usage] : a.152.1.3 |AhpD-like |AhpD-like |Atu0492-like |Hypothetical protein PA0269 |Pseudomonas aeruginosa [TaxId: 287]
d1e1ca1 : (PRO505) (GLU553) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d2hyec2 : (LEU307) (GLN338) [view usage] : a.118.17.1 |alpha-alpha superhelix |Cullin repeat-like |Cullin repeat |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d2ee5a_ : (LEU113) (HIS162) [view usage] : a.116.1.0 |GTPase activation domain, GAP |GTPase activation domain, GAP |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w37a_ : (LEU203) (GLY254) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |2-keto-3-deoxy gluconate aldolase Eda |Sulfolobus solfataricus [TaxId: 2287]
d4p7wa_ : (GLU203) (GLY253) [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Rhizobium loti [TaxId: 266835]
d2zy9a1 : (LEU97) (ARG128) [view usage] : a.118.26.1 |alpha-alpha superhelix |MgtE N-terminal domain-like |MgtE N-terminal domain-like |Magnesium transporter MgtE |Thermus thermophilus [TaxId: 274]
d1ocrh_ : (GLN25) (GLY79) [view usage] : a.51.1.1 |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cytochrome c oxidase subunit h |Cow (Bos taurus) [TaxId: 9913]
d3l0ja_ : (SER413) (LEU466) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i76b1 : (GLY214) (SER254) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1me5a_ : (ASN116) (GLU172) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d1u65a_ : (GLU443) (THR479) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d4lsoa_ : (GLU99) (SER145) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella quintana [TaxId: 1134506]
d1bipa_ : (LEU17) (MET64) [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
d1ni5a4 : (LEU227) (ASN266) [view usage] : d.229.1.1 |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain |Escherichia coli [TaxId: 562]
d2gp3b_ : (TRP296) (GLY335) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d2gyag1 : (PRO73) (ALA132) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Escherichia coli [TaxId: 562]
d2h7ba1 : (GLY26) (LEU70) [view usage] : a.277.1.1 |TAFH domain-like |TAFH domain-like |TAFH domain-like |ETO |Human (Homo sapiens) [TaxId: 9606]
d2bisa1 : (ALA160) (TYR185) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Pyrococcus abyssi [TaxId: 29292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.69, i.1, a.118, a.128, a.102, c.77, c.14, d.2, d.3, c.87, a.123, a.25, d.17, a.152, a.100, a.4, f.1, a.116,
a.27, a.60, a.28, a.80, a.52, a.110, a.268, a.5, a.277, f.55, a.36, d.229, a.237, a.90, a.51