Tableau information
Concept source: d3niyb_ amino acid (a.a.) range (PRO63)(ASN95)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO63) (LYS68) H1
(TRP69) (PRO74) H2
(THR82) (ASN95) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -44.9° H2
H3 -140.9° -117.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1v5ea1 : (THR239) (LEU253) [view usage] : c.31.1.3 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Pyruvate oxidase and decarboxylase, middle domain |Pyruvate oxidase |Aerococcus viridans [TaxId: 1377]
d1ezoa_ : (LEU304) (GLY327) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1shza1 : (GLY171) (LEU198) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1q9ya2 : (GLY472) (ASN575) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4oltb_ : (ASN75) (GLU109) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |automated matches |Pseudomonas sp. [TaxId: 878476]
d1gu6a_ : (ASN42) (GLN62) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Cytochrome c nitrite reductase |Escherichia coli [TaxId: 562]
d1ezvb2 : (ILE318) (SER334) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3cfoa2 : (GLY469) (ASN572) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1yv2a_ : (TRP408) (GLN436) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d2dtuc2 : (GLY469) (ASN572) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2w67b3 : (SER440) (ASN485) [view usage] : a.246.1.1 |Hyaluronidase domain-like |Hyaluronidase post-catalytic domain-like |Hyaluronidase post-catalytic domain-like |Glucosaminidase GH84 post-catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3jwqa_ : (LEU725) (LYS770) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3suqa2 : (VAL470) (GLY568) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d2bhza3 : (GLY458) (GLY480) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Deinococcus radiodurans [TaxId: 1299]
d4apya_ : (ASP11) (SER33) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d2afkh_ : (CYS132) (GLN145) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d2hpgb_ : (ASP88) (ASN103) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d2duka_ : (VAL114) (GLY138) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2igsg_ : (ASP60) (GLU92) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1qdlb_ : (HIS175) (LEU192) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Anthranilate synthase GAT subunit, TrpG |Sulfolobus solfataricus [TaxId: 2287]
d1gsza2 : (SER178) (ARG251) [view usage] : a.102.4.2 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Terpene synthases |Squalene-hopene cyclase |Alicyclobacillus acidocaldarius [TaxId: 405212]
d2rf7a_ : (ASN42) (GLN62) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Cytochrome c nitrite reductase |Escherichia coli K-12 [TaxId: 83333]
d2dwwa_ : (LYS4) (PRO34) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1xjsa_ : (ILE85) (GLY139) [view usage] : d.224.1.2 |SufE/NifU |SufE/NifU |NifU/IscU domain |NifU |Bacillus subtilis [TaxId: 1423]
d3jusa_ : (ASN422) (VAL440) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4c1ic_ : (LEU770) (LEU809) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3c7lb_ : (ASP132) (ASP165) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling 16, RGS16 |Mouse (Mus musculus) [TaxId: 10090]
d3dysa_ : (ASP364) (ASP402) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d3dysa_ : (THR448) (GLU502) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d1c9ya2 : (SER267) (ALA280) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d1kzga1 : (PRO768) (ILE818) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Dbl's big sister, Dbs |Mouse (Mus musculus) [TaxId: 10090]
d4d08d1 : (LEU770) (LEU809) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1suoa_ : (ASP189) (THR255) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2b4 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d4l4pa_ : (PRO49) (HIS80) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d2qppa_ : (PRO128) (ARG156) [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ejli_ : (ILE164) (ASP192) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
d2h42a_ : (LEU725) (LEU765) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx |Human (Homo sapiens) [TaxId: 9606]
d1tmla_ : (SER12) (VAL36) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellulase E2 |Thermobifida fusca YX [TaxId: 269800]
d3k3ea_ : (ASP364) (ILE403) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
d4qgea_ : (THR448) (LYS505) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Chimpanzee (Pan troglodytes) [TaxId: 9598]
d1y2ia_ : (ALA29) (GLY73) [view usage] : d.230.5.1 |Dodecin subunit-like |YbjQ-like |YbjQ-like |Hypothetical protein YbjQ |Shigella flexneri [TaxId: 623]
d1b1ua_ : (LEU17) (PRO52) [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
d2penf_ : (PHE3) (LYS46) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d4pdha_ : (THR101) (LEU114) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d3ur8a_ : (PRO80) (PHE105) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
d3ppha1 : (ALA354) (SER397) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1ugsa_ : (GLU128) (GLY148) [view usage] : d.149.1.1 |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Cobalt-containing nitrile hydratase |Pseudonocardia thermophila [TaxId: 1848]
d2ylja_ : (GLN176) (CYS209) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
d2pejf1 : (LYS5) (HIS48) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d1gx2a_ : (GLN176) (LEU208) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
d1clqa2 : (GLY469) (ASN572) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3sn9a_ : (SER139) (LEU165) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
d1enja_ : (ALA13) (GLY82) [view usage] : a.18.1.1 |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |Bacteriophage T4 [TaxId: 10665]
d1ecwa_ : (ASN53) (GLU91) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |SIV matrix antigen |Simian immunodeficiency virus [TaxId: 11723]
d1i39a_ : (GLY34) (LYS55) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Archaeoglobus fulgidus [TaxId: 2234]
d2iv0a_ : (ILE275) (ASP291) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1cjsa_ : (ARG81) (HIS102) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus jannaschii [TaxId: 2190]
d1zcba1 : (LYS175) (LEU198) [view usage] : a.66.1.1 |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Transducin (alpha subunit), insertion domain |Mouse (Mus musculus) [TaxId: 10090]
d2chma1 : (LEU725) (LYS770) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx |Human (Homo sapiens) [TaxId: 9606]
d1i7ka_ : (ASN149) (VAL174) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch10 [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.94, a.104, c.6, a.118, a.102, c.77, a.93, a.211, c.23, c.37, d.185, c.55, d.2, c.31, a.132, c.78, d.20, a.138,
a.29, a.91, d.113, a.87, a.66, e.24, d.224, a.265, a.61, a.280, a.52, d.149, a.246, d.230, a.18