Tableau information
Concept source: d3g5gn_ amino acid (a.a.) range (THR23)(GLU61)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR23) (SER31) H1
(ASP34) (SER45) H2
(THR49) (GLU61) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 121.0° H2
H3 113.0° -103.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (ASP87) (THR115) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2f6sb_ : (MSE1) (ALA46) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |Cell filamentation protein Fic |Helicobacter pylori [TaxId: 210]
d1qrkb4 : (ILE234) (ALA268) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d3bp9a_ : (THR64) (ARG131) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d1i11a_ : (ASN8) (PRO68) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Sox-5 |Mouse (Mus musculus) [TaxId: 10090]
d1j46a_ : (ASN10) (TYR69) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |SRY |Human (Homo sapiens) [TaxId: 9606]
d3ntwc_ : (PHE2398) (ALA2437) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3zlma_ : (SER13) (ALA57) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 487]
d1i4wa_ : (GLY284) (TRP321) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Transcription factor sc-mtTFB |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3k1eb_ : (PRO13) (LYS63) [view usage] : a.39.2.0 |EF Hand-like |Insect pheromone/odorant-binding proteins |automated matches |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d2y4za_ : (THR64) (GLU134) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |automated matches |Murine leukemia virus [TaxId: 11786]
d2o14a2 : (VAL317) (GLY363) [view usage] : c.23.10.8 |Flavodoxin-like |SGNH hydrolase |YxiM C-terminal domain-like |Hypothetical protein YxiM |Bacillus subtilis [TaxId: 1423]
d4ivec_ : (ALA573) (GLN610) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d2fa_ : (GLY114) (VAL159) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1o4xb_ : (ASN213) (HIS272) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Sox-2 |Human (Homo sapiens) [TaxId: 9606]
d3zcha_ : (SER9) (GLU82) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d3zcha_ : (SER138) (ILE165) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d3d43b_ : (THR249) (LYS284) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
d1j47a_ : (ASN10) (TYR69) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |SRY |Human (Homo sapiens) [TaxId: 9606]
d3f27d_ : (ASN73) (PRO133) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2d7la_ : (THR11) (GLY62) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vg1a_ : (GLY160) (GLU196) [view usage] : c.101.1.0 |Undecaprenyl diphosphate synthase |Undecaprenyl diphosphate synthase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3bzwb_ : (ASP234) (LEU279) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d3ddvb_ : (PRO56) (LYS79) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Transcriptional regulator EF1328 |Enterococcus faecalis [TaxId: 1351]
d2mlxa3 : (ASP363) (ALA413) [view usage] : a.223.1.0 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |automated matches |automated matches |Escherichia coli [TaxId: 1403831]
d2rtua_ : (SER17) (TYR81) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bzwa1 : (ASP234) (LEU279) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d3bp9b_ : (GLY65) (ARG131) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d3iecb_ : (PRO326) (TYR363) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zcya_ : (ALA10) (GLU82) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d2fk6a1 : (ALA160) (LEU197) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Bacillus subtilis [TaxId: 1423]
d1wyla_ : (GLY62) (PHE109) [view usage] : a.40.1.0 |CH domain-like |Calponin-homology domain, CH-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nbub_ : (SER436) (LYS461) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |automated matches |Escherichia coli [TaxId: 668369]
d1gt0d_ : (ASN8) (PRO68) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Sox-2 |Mouse (Mus musculus) [TaxId: 10090]
d1rj4b_ : (ASN2) (THR29) [view usage] : a.29.6.1 |Bromodomain-like |Plant invertase/pectin methylesterase inhibitor |Plant invertase/pectin methylesterase inhibitor |Invertase inhibitor |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1wgfa_ : (SER26) (GLU82) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) |Mouse (Mus musculus) [TaxId: 10090]
d2kyga_ : (GLY8) (ALA42) [view usage] : a.31.1.1 |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mstb_ : (TYR241) (ALA277) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d3kurc_ : (ALA578) (GLN615) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r72a_ : (SER5) (ARG57) [view usage] : a.39.2.0 |EF Hand-like |Insect pheromone/odorant-binding proteins |automated matches |automated matches |Honeybee (Apis mellifera) [TaxId: 7460]
d3w3ea_ : (PHE190) (GLY226) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Cowpea (Vigna unguiculata) [TaxId: 3917]
d3bp9e_ : (THR64) (SER132) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |Murine leukemia virus [TaxId: 11786]
d1l8ya_ : (LYS8) (LEU67) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) |Human (Homo sapiens) [TaxId: 9606]
d1aaba_ : (SER13) (TYR77) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |High mobility group protein 1, HMG1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3u2bc_ : (ASN8) (TYR67) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1j3da_ : (SER13) (ARG76) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |High mobility group protein 2, HMG2 |Pig (Sus scrofa) [TaxId: 9823]
d1qrka4 : (GLY233) (VAL266) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1w26a1 : (ALA304) (ASN358) [view usage] : a.223.1.1 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |TF C-terminus |Trigger factor, C-terminal domain |Escherichia coli [TaxId: 562]
d1w26a1 : (GLU364) (ALA415) [view usage] : a.223.1.1 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |TF C-terminus |Trigger factor, C-terminal domain |Escherichia coli [TaxId: 562]
d3mm1a_ : (ASP87) (THR115) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d1u7ka_ : (THR64) (ARG131) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |AKV capsid |AKV murine leukemia virus [TaxId: 11791]
d3s6aa_ : (LYS12) (ALA57) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
d2e6oa_ : (ASN23) (ASN82) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j3ca_ : (ALA15) (ALA78) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |High mobility group protein 2, HMG2 |Pig (Sus scrofa) [TaxId: 9823]
d1mfza1 : (VAL203) (SER254) [view usage] : a.100.1.4 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |UDP-glucose/GDP-mannose dehydrogenase dimerisation domain |GDP-mannose 6-dehydrogenase, middle domain |Pseudomonas aeruginosa [TaxId: 287]
d1xrsa_ : (MET78) (GLU144) [view usage] : c.1.19.4 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |D-lysine 5,6-aminomutase alpha subunit, KamD |D-lysine 5,6-aminomutase alpha subunit, KamD |Clostridium sticklandii [TaxId: 1511]
d1tzva_ : (ILE61) (LEU93) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Thermotoga maritima [TaxId: 2336]
d2d09a_ : (ARG71) (SER107) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1dewa_ : (GLU216) (GLN245) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |DNA repair endonuclease Hap1 |Human (Homo sapiens) [TaxId: 9606]
d1yzfa1 : (ASP148) (LEU190) [view usage] : c.23.10.5 |Flavodoxin-like |SGNH hydrolase |TAP-like |Lipase/acylhydrolase |Enterococcus faecalis [TaxId: 1351]
d1f3ma_ : (PRO100) (SER137) [view usage] : j.66.1.1 |pak1 autoregulatory domain |pak1 autoregulatory domain |pak1 autoregulatory domain |pak1 autoregulatory domain |Human (Homo sapiens) [TaxId: 9606]
d4gnia2 : (GLY242) (LEU288) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d2g03a1 : (ASP15) (ALA57) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |Hypothetical protein NMA0004 |Neisseria meningitidis [TaxId: 487]
d1r8wa_ : (LYS565) (ALA599) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Glycerol dehydratase DhaB1 |Clostridium butyricum [TaxId: 1492]
d1cnsa_ : (PHE191) (LEU226) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |Plant class II chitinase |Barley (Hordeum vulgare) [TaxId: 4513]
d3sn9a_ : (SER13) (ALA57) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
d1yhta1 : (THR122) (PHE171) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Dispersin B, DspB |Actinobacillus actinomycetemcomitans [TaxId: 714]
d2hmxa_ : (LYS31) (LEU69) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d3se5a_ : (SER13) (ALA57) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
d2rqgb_ : (ALA578) (GLN618) [view usage] : a.144.1.1 |PABP domain-like |PABC (PABP) domain |PABC (PABP) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bg1a1 : (ASP337) (ASN385) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1hmea_ : (SER12) (ALA73) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |High mobility group protein 1, HMG1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2l4ha_ : (LYS70) (PHE115) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lqca_ : (LEU6) (ASN46) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Lac repressor (LacR), N-terminal domain |Escherichia coli [TaxId: 562]
d3ek6b_ : (GLY54) (GLY96) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, a.104, d.58, d.157, c.66, c.80, a.93, c.23, d.144, c.37, c.7, c.55, d.2, d.151, d.3, c.73, c.41, c.101, a.100,
a.39, a.29, a.73, a.79, a.40, a.265, a.61, a.35, a.21, a.144, a.31, d.190, a.223, j.66