Tableau information
Concept source: d2r26c_ amino acid (a.a.) range (SER36)(ILE78)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER36) (GLY44) H1
(ASP47) (GLY57) H2
(THR61) (ILE78) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 139.5° H2
H3 -89.4° 98.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bkra_ : (SER55) (LYS83) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tvia_ : (LEU79) (GLY135) [view usage] : d.92.1.15 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Predicted metal-dependent hydrolase |Hypothetical protein TM1509 |Thermotoga maritima [TaxId: 2336]
d3u5ih_ : (THR85) (ALA110) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4mu8a_ : (THR49) (GLU103) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d6cscb_ : (SER70) (ALA118) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d2evua_ : (ASN82) (GLY130) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d2x5wa_ : (ASP347) (ASP396) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2i10a1 : (VAL13) (ALA49) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Putative transcriptional regulator RHA1_ro09068 |Rhodococcus sp. [TaxId: 1831]
d2gtga_ : (PHE32) (HIS76) [view usage] : a.64.1.1 |Saposin-like |Saposin |NKL-like |Saposin C |Human (Homo sapiens) [TaxId: 9606]
d2dfsc1 : (GLN8) (MET51) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Mouse (Mus musculus) [TaxId:10090]
d2p1ab_ : (THR62) (GLU106) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BCE2162 |Bacillus cereus [TaxId: 1396]
d1kohb_ : (SER326) (LEU349) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1y6wa_ : (THR5) (VAL55) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d1kjsa_ : (LYS4) (ALA39) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d3cxya_ : (ASP315) (LYS365) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d2obha_ : (SER122) (LYS168) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d1n2da_ : (ALA3) (ASP50) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b0ua_ : (ALA117) (LYS149) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ATP-binding subunit of the histidine permease |Salmonella typhimurium [TaxId: 90371]
d1eg3a1 : (HIS85) (SER125) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Dystrophin |Human (Homo sapiens) [TaxId: 9606]
d1kn1b_ : (ASP3) (SER59) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Allophycocyanin beta subunit |Red algae (Porphyra yezoensis) [TaxId: 2788]
d1q9cg_ : (PRO106) (ASP169) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Histone domain of Son of sevenless protein |Human (Homo sapiens) [TaxId: 9606]
d2hp5a_ : (THR107) (SER140) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
d2i10b1 : (GLN12) (ALA49) [view usage] : a.4.1.9 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Tetracyclin repressor-like, N-terminal domain |Putative transcriptional regulator RHA1_ro09068 |Rhodococcus sp. [TaxId: 1831]
d2v6ia2 : (THR340) (ASP378) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Kokobera virus [TaxId: 44024]
d1v33a_ : (THR7) (THR31) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d2x9ry_ : (ALA81) (ASN115) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3c6na_ : (LYS111) (GLU160) [view usage] : a.157.1.0 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2z83a2 : (GLU529) (ASP566) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Japanese encephalitis virus [TaxId: 11072]
d3j39u_ : (THR198) (ASN230) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1of9a_ : (LEU4) (ALA43) [view usage] : a.64.1.4 |Saposin-like |Saposin |Ameobapore A |Ameobapore A |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3li6d_ : (ALA4) (ILE65) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Entamoeba histolytica [TaxId: 294381]
d1edza2 : (PHE99) (HIS133) [view usage] : c.58.1.2 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Tetrahydrofolate dehydrogenase/cyclohydrolase |Tetrahydrofolate dehydrogenase/cyclohydrolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ue8a_ : (PRO93) (LEU151) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus tokodaii [TaxId: 111955]
d3h4nb_ : (GLY25) (LYS70) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1xpyc2 : (PRO90) (GLY131) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |N-acylamino acid racemase |Deinococcus radiodurans [TaxId: 1299]
d4hl6d_ : (GLY135) (GLN195) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1m39a_ : (PHE123) (ARG164) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Caltractin (centrin 2) |Human (Homo sapiens) [TaxId: 9606]
d1udeb_ : (PRO114) (GLY146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
d1e5la2 : (SER292) (LYS347) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Saccharopine reductase |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1k7ya3 : (GLU1068) (GLU1128) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d1reoa2 : (GLY375) (PHE411) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |L-aminoacid oxidase |Halys viper (Agkistrodon halys) [TaxId: 8714]
d2qeqb2 : (GLY528) (PHE565) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |West nile virus [TaxId: 11078]
d4g9sa_ : (GLY150) (GLY184) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic salmon (Salmo salar) [TaxId: 8030]
d3t6dh2 : (SER215) (GLU255) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Blastochloris viridis [TaxId: 1079]
d2uxsa_ : (PRO107) (VAL131) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2qzsa_ : (TYR170) (LEU202) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1zwyd_ : (PRO117) (GLY146) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1nyaa_ : (ALA27) (ARG82) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calerythrin |Saccharopolyspora erythraea [TaxId: 1836]
d1wlma1 : (THR58) (LYS113) [view usage] : a.39.1.11 |EF Hand-like |EF-hand |p25-alpha |Protein cgi-38 |Mouse (Mus musculus) [TaxId: 10090]
d1nmia_ : (ASP50) (THR102) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3d1ja_ : (TYR170) (LEU202) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3copa_ : (TYR170) (LEU202) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1tj7a_ : (PHE381) (SER426) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Escherichia coli [TaxId: 562]
d1orqc_ : (HIS24) (ILE94) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |Potassium channel KVAP |Aeropyrum pernix [TaxId: 56636]
d1z00b1 : (ASP871) (SER899) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Human (Homo sapiens) [TaxId: 9606]
d1v9ja_ : (ALA69) (ILE94) [view usage] : d.52.6.1 |Alpha-lytic protease prodomain-like |BolA-like |BolA-like |BolA-like protein |Mouse (Mus musculus) [TaxId: 10090]
d2nvub1 : (LEU2235) (ARG2287) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d2ya3e2 : (TYR254) (PHE272) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |5'-AMP-activated protein kinase subunit gamma-1, AMPKg |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3h4na_ : (GLY25) (HIS69) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.10, c.123, a.104, i.1, d.92, a.127, b.40, c.37, a.103, d.2, d.3, c.87, d.81, d.37, c.51, c.111, a.1, a.4, a.39,
b.41, a.138, a.3, c.58, d.16, f.19, d.54, e.38, a.60, d.52, d.264, a.157, a.22, a.64, a.213, f.14, d.173, a.50